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[172517_x_at]

Description Y39G8B.1A /REP_DB=WormBase Gene ID /WP=CE21733 /TR=Q9NAI5 /GB=CAB54385.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 33      6grp_total > 51      4grp_total > 56      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1461
1 2 3 4 range
A 569.9
(-3)
P 		1553.7
(1.1)
P 		1996.6
(3)
P 		582.7
(-2.9)
P 		1427
B 824.3
(-1.8)
P 		1525.4
(1.7)
P 		1793.6
(3)
P 		573
(-3)
P 		1221
C 636.6
(-2.5)
P 		1430.7
(1.6)
P 		1706.2
(3)
P 		535.7
(-3)
P 		1171
avr 676.9
(-2.5) 		1503.3
(1.4) 		1832.1
(3) 		563.8
(-3) 		1268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1411
1 2 3 4 5 6 range
A 1297.6
(-0.2)
P 		1435.4
(0.6)
P 		1890.5
(3)
P 		1693.9
(1.9)
P 		1414.6
(0.4)
P 		774.7
(-3)
P 		1116
B 1227.2
(-0.8)
P 		1415.9
(0.1)
P 		1788.4
(2.1)
P 		1973.9
(3)
P 		1282.2
(-0.5)
P 		801.4
(-3)
P 		1173
C 1600.5
(1.3)
P 		1275.2
(-0)
P 		1990.7
(3)
P 		1501.8
(0.9)
P 		1528.7
(1)
P 		579.9
(-3)
P 		1411
avr 1375.1
(0.4) 		1375.5
(0.4) 		1889.9
(3) 		1723.2
(2.1) 		1408.5
(0.5) 		718.7
(-3) 		1171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 509
1 2 3 4 range
A 207.5
(-1.3)
P 		337.3
(0.5)
P 		522
(3)
P 		85.3
(-3)
P 		437
B 262.9
(-0.1)
P 		376.7
(2.2)
P 		415.6
(3)
P 		122.1
(-3)
P 		294
C 210.7
(-1.6)
P 		411.3
(0.8)
P 		594.7
(3)
P 		90.3
(-3)
P 		504
avr 227
(-1.1) 		375.1
(1) 		510.8
(3) 		99.2
(-3) 		412

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 239.2
(-2.1)
P 		510.5
(3)
P 		411.7
(1.2)
P 		429.6
(1.5)
P 		426.9
(1.4)
P 		188.6
(-3)
P 		322
B 427
(0.4)
P 		471.3
(1.6)
P 		434.3
(0.6)
P 		522.8
(3)
P 		520.9
(2.9)
P 		298.8
(-3)
P 		224
C 593.2
(3)
P 		389.1
(-0.1)
P 		506.7
(1.7)
P 		302
(-1.4)
P 		494.7
(1.5)
P 		194.1
(-3)
P 		399
avr 419.8
(1.6) 		457
(2.4) 		450.9
(2.3) 		418.1
(1.5) 		480.8
(3) 		227.2
(-3) 		254
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172517_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3039
Sequence Type Exemplar sequence
Representative Public ID Y39G8B.1A NCBI
Target Description Y39G8B.1A /REP_DB=WormBase Gene ID /WP=CE21733 /TR=Q9NAI5 /GB=CAB54385.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064523(10), NM_064524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064523 NCBI Caenorhabditis elegans Y39G8B.1b (Y39G8B.1) mRNA, complete cds. 10/11 A 
NM_064524 NCBI Caenorhabditis elegans Y39G8B.1a (Y39G8B.1) mRNA, complete cds. 11/11 A 
SNAP00000038665 ENSEMBL cdna:SNAP chromosome:CEL140:II:13970562:13973584:-1 10/11 None
GENEFINDER00000038672 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13970803:13972835:-1 11/11 None
Y39G8B.1b ENSEMBL cdna:known chromosome:CEL140:II:13970534:13972835:-1 gene:Y39G8B.1 10/11 A 
Y39G8B.1a ENSEMBL cdna:known chromosome:CEL140:II:13970683:13972838:-1 gene:Y39G8B.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13970799-13972832(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39G8B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54385 Hypothetical protein Y39G8B.1a [Caenorhabditis elegans] ref|NP_496925.1| Y39G8B.1a [Caenorhabditis elegans] 1.0E-179
blast CAB60335 Hypothetical protein Y39G8B.1b [Caenorhabditis elegans] ref|NP_496924.1| Y39G8B.1b [Caenorhabditis elegans] 1.0E-178
blast CAB60335 Hypothetical protein Y39G8B.1b [Caenorhabditis elegans] ref|NP_496924.1| Y39G8B.1b [Caenorhabditis elegans] 1.0E-172
blast CAB54385 Hypothetical protein Y39G8B.1a [Caenorhabditis elegans] ref|NP_496925.1| Y39G8B.1a [Caenorhabditis elegans] 1.0E-167
blast CAB60335 Hypothetical protein Y39G8B.1b [Caenorhabditis elegans] ref|NP_496924.1| Y39G8B.1b [Caenorhabditis elegans] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 1.0E-126
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:172517_X_AT
tcatccactggccacaaggttacgcagaaggcgctgagctcttcccagccggcgagaacg
gaaaaatgcgttactccgatgtggattacctcgagacctggaaggcattcgaggccgctc
aaaaagccggaaaatgtcggtccatcgggctgtccaacttcacccacagccagatccagc
gcgtctgggatgcggcggaggtgaagccggcctgtcttcaagtcgagcttcatccatact
tcacgcaagtcaagctccgcgagttttgcaaggagaagggtattgtggtggtcgggtact
caccgctcggcaaccccggatccgcgttcttccgtaaggatggagatccgaacgtgctca
ccaatgaggttgtcgccgggattgcaaaggctcatggaaagactcccgcccaaatcatcc
ttcgttggttcgtcgacagtgggctctcggccatcccaaaatcagtgacaccacaacgaa
tctccgaaaaccttgcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCCACTGGCCACAAGGTTACGC 523 619 338 Antisense
TACGCAGAAGGCGCTGAGCTCTTCC 379 649 358 Antisense
ACCTGGAAGGCATTCGAGGCCGCTC 271 89 433 Antisense
CAGATCCAGCGCGTCTGGGATGCGG 204 207 508 Antisense
TGTCTTCAAGTCGAGCTTCATCCAT 204 559 550 Antisense
ACTTCACGCAAGTCAAGCTCCGCGA 473 103 575 Antisense
GGATGGAGATCCGAACGTGCTCACC 466 515 675 Antisense
AAGGCTCATGGAAAGACTCCCGCCC 421 161 724 Antisense
TCCTTCGTTGGTTCGTCGACAGTGG 696 589 755 Antisense
TCGGCCATCCCAAAATCAGTGACAC 22 607 784 Antisense
ACGAATCTCCGAAAACCTTGCAGTT 240 91 813 Antisense
Sequence Source Affymetrix Proprietary Database