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[172515_x_at]

Description W08A12.2 /REP_DB=WormBase Gene ID /WP=CE14698 /TR=O01620 /GB=AAB52321.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 01      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 51      6grp_total > 33      4grp_total > 14      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 778
1 2 3 4 range
A 651.8
(1.4)
P 		248.3
(-2.1)
P 		136.1
(-3)
P 		846.2
(3)
P 		710
B 754.9
(1.7)
P 		223.7
(-2.4)
P 		152.8
(-3)
P 		913.7
(3)
P 		761
C 665.8
(2.9)
P 		234.4
(-2.9)
P 		228
(-3)
P 		673.5
(3)
P 		446
avr 690.8
(1.9) 		235.5
(-2.4) 		172.3
(-3) 		811.1
(3) 		639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 662
1 2 3 4 5 6 range
A 554.1
(0.8)
P 		531.1
(0.1)
P 		594.3
(1.8)
P 		636.9
(3)
P 		492
(-0.9)
P 		415.3
(-3)
P 		222
B 631
(2)
P 		504.3
(0.3)
P 		704.5
(3)
P 		440
(-0.5)
P 		487.4
(0.1)
P 		255.9
(-3)
P 		449
C 918
(3)
P 		542.9
(-1)
P 		511.7
(-1.3)
P 		433
(-2.2)
P 		564.5
(-0.8)
P 		356.7
(-3)
P 		561
avr 701
(3) 		526.1
(0.1) 		603.5
(1.4) 		503.3
(-0.3) 		514.6
(-0.1) 		342.6
(-3) 		358
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 237.3
(3)
P 		53.9
(-2.5)
P 		35.6
(-3)
P 		123.9
(-0.4)
P 		202
B 240.7
(3)
P 		55.2
(-2.4)
P 		35.4
(-3)
P 		194.7
(1.7)
P 		205
C 220.4
(3)
P 		67.4
(-3)
P 		79.5
(-2.5)
P 		113.6
(-1.2)
P 		153
avr 232.8
(3) 		58.8
(-2.7) 		50.2
(-3) 		144.1
(0.1) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 102.1
(-2.9)
P 		188.9
(3)
P 		129.4
(-1.1)
P 		161.5
(1.1)
P 		148.5
(0.2)
P 		101.1
(-3)
P 		88
B 219.6
(3)
P 		167.9
(0.5)
P 		171.1
(0.7)
P 		116.5
(-2)
P 		198
(2)
P 		95.4
(-3)
P 		124
C 340.3
(3)
P 		165.6
(-1.1)
P 		130.2
(-2)
P 		87.1
(-3)
P 		182.7
(-0.7)
P 		119.4
(-2.2)
P 		253
avr 220.7
(3) 		174.1
(0.6) 		143.6
(-1) 		121.7
(-2.1) 		176.4
(0.7) 		105.3
(-3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172515_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15099
Sequence Type Exemplar sequence
Representative Public ID W08A12.2 NCBI
Target Description W08A12.2 /REP_DB=WormBase Gene ID /WP=CE14698 /TR=O01620 /GB=AAB52321.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071627 NCBI Caenorhabditis elegans W08A12.2 (W08A12.2) mRNA, complete cds. 11/11 None
W08A12.2 ENSEMBL cdna:known chromosome:CEL140:V:3684475:3685533:-1 gene:W08A12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3684632-3685533(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08A12.2
Entrez Gene 178786 Entrez gene
SwissProt O01620 EMBL-EBI
WormBase CE14698 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52321 Hypothetical protein W08A12.2 [Caenorhabditis elegans] ref|NP_504028.1| W08A12.2 [Caenorhabditis elegans] 2.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504028.1 1 7-29
W08A12.2 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:172515_X_AT
aacatcgacgctattcgttttcacaattttactttctattttcttcttgacagttgaaag
cagtctacccgactggtggcacctgcattcaccgttccccaaagattacgacgacatgac
cgagggacgtgtcaaccagaaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATCGACGCTATTCGTTTTCACA 319 137 18 Antisense
GACGCTATTCGTTTTCACAATTTTA 487 379 24 Antisense
TCGTTTTCACAATTTTACTTTCTAT 206 605 32 Antisense
TTTACTTTCTATTTTCTTCTTGACA 644 673 45 Antisense
TTTCTATTTTCTTCTTGACAGTTGA 540 671 50 Antisense
GACAGTTGAAAGCAGTCTACCCGAC 126 369 66 Antisense
AAAGCAGTCTACCCGACTGGTGGCA 408 123 74 Antisense
CATTCACCGTTCCCCAAAGATTACG 573 213 103 Antisense
GTTCCCCAAAGATTACGACGACATG 90 441 111 Antisense
ACGACGACATGACCGAGGGACGTGT 383 93 125 Antisense
CGAGGGACGTGTCAACCAGAACCGA 357 63 138 Antisense
Sequence Source Affymetrix Proprietary Database