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[172513_at]

Description C54A12.3 /REP_DB=WormBase Gene ID /WP=CE01867 /TR=Q09939 /GB=AAA68304.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 8
(-2.5)
A 		5.1
(-3)
A 		39.3
(3)
A 		28.6
(1.1)
A 		34
B 37.8
(3)
A 		11
(-1.6)
A 		7.6
(-2.2)
A 		2.7
(-3)
A 		35
C 2.8
(-3)
A 		19.3
(3)
A 		18.7
(2.8)
A 		9.4
(-0.6)
A 		17
avr 16.2
(-0.4) 		11.8
(-3) 		21.9
(3) 		13.6
(-1.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 3.3
(-3)
A 		14.1
(-1.2)
A 		39.7
(3)
A 		3.2
(-3)
A 		6.8
(-2.4)
A 		10.5
(-1.8)
A 		37
B 8.3
(-2.3)
A 		35.1
(3)
A 		4.8
(-3)
A 		7.2
(-2.5)
A 		15.4
(-0.9)
A 		7.7
(-2.4)
A 		30
C 2.9
(-3)
A 		8.7
(2.7)
A 		5.2
(-0.7)
A 		3.8
(-2.1)
A 		9
(3)
A 		4.2
(-1.7)
A 		6
avr 4.8
(-3) 		19.3
(3) 		16.6
(1.9) 		4.7
(-3) 		10.4
(-0.7) 		7.5
(-1.8) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.9
(-1.8)
A 		1.1
(-3)
A 		10.3
(3)
A 		4.2
(-1)
A 		9
B 12
(3)
A 		2.7
(-1.9)
A 		1.8
(-2.4)
A 		0.6
(-3)
A 		11
C 0.9
(-3)
A 		5.5
(1.9)
A 		6.5
(3)
A 		1.6
(-2.3)
A 		6
avr 5.3
(1.7) 		3.1
(-1.5) 		6.2
(3) 		2.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.6
(-3)
A 		5
(0.3)
A 		8.7
(3)
A 		0.8
(-2.9)
A 		2
(-2)
A 		2.5
(-1.6)
A 		8
B 2.9
(-2)
A 		11.7
(3)
A 		1.2
(-3)
A 		1.9
(-2.6)
A 		6.2
(-0.1)
A 		2.9
(-2)
A 		11
C 1.1
(-2.1)
A 		2.6
(2.1)
A 		1.3
(-1.6)
A 		0.8
(-3)
A 		2.9
(3)
A 		1.4
(-1.3)
A 		2
avr 1.5
(-2.7) 		6.4
(3) 		3.7
(-0.1) 		1.2
(-3) 		3.7
(-0.1) 		2.3
(-1.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172513_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5490
Sequence Type Exemplar sequence
Representative Public ID C54A12.3 NCBI
Target Description C54A12.3 /REP_DB=WormBase Gene ID /WP=CE01867 /TR=Q09939 /GB=AAA68304.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062587 NCBI Caenorhabditis elegans C54A12.3 (C54A12.3) mRNA, complete cds. 11/11 None
C54A12.3 ENSEMBL cdna:known chromosome:CEL140:II:5260982:5261295:1 gene:C54A12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5260979-5261293(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54A12.3
Entrez Gene 183764 Entrez gene
SwissProt Q09939 EMBL-EBI
WormBase CE01867 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68304 Hypothetical protein C54A12.3 [Caenorhabditis elegans] ref|NP_494988.1| C54A12.3 [Caenorhabditis elegans] 4.0E-17
Sequence
Target Sequence 
>C. ELEGANS:172513_AT
atgttttgttctagcaatatacccatccgtcttcgtgacaagaaagaaaacaacagtata
atagtgcttccgggaggttccgaaaaaagcgctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTTTGTTCTAGCAATATACCCA 426 47 13 Antisense
GTTTTGTTCTAGCAATATACCCATC 133 449 15 Antisense
TTTGTTCTAGCAATATACCCATCCG 293 665 17 Antisense
CCCATCCGTCTTCGTGACAAGAAAG 181 259 34 Antisense
ATCCGTCTTCGTGACAAGAAAGAAA 275 39 37 Antisense
ACAACAGTATAATAGTGCTTCCGGG 605 111 62 Antisense
AACAGTATAATAGTGCTTCCGGGAG 587 131 64 Antisense
GTATAATAGTGCTTCCGGGAGGTTC 348 453 68 Antisense
ATAATAGTGCTTCCGGGAGGTTCCG 482 1 70 Antisense
TAATAGTGCTTCCGGGAGGTTCCGA 42 627 71 Antisense
GGGAGGTTCCGAAAAAAGCGCTGCA 97 495 84 Antisense
Sequence Source Affymetrix Proprietary Database