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[172512_x_at]

Description R08C7.11 /REP_DB=WormBase Gene ID /WP=CE07434 /TR=Q21846 /GB=AAC48079.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 9.7
(3)
A 		8.2
(-0.6)
A 		7.2
(-3)
A 		9.7
(3)
A 		3
B 7
(-2.6)
A 		60.2
(3)
A 		7.3
(-2.6)
A 		3.2
(-3)
A 		57
C 6.3
(-2.1)
A 		21.8
(3)
A 		7.1
(-1.8)
A 		3.6
(-3)
A 		18
avr 7.7
(-2.5) 		30.1
(3) 		7.2
(-2.6) 		5.5
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 5.5
(-2.3)
A 		4.3
(-2.6)
A 		28.2
(3)
A 		27.7
(2.9)
A 		2.7
(-3)
A 		4.5
(-2.6)
A 		26
B 18.9
(0.6)
A 		6.8
(-2.1)
A 		3.1
(-2.9)
A 		4.3
(-2.6)
A 		2.6
(-3)
A 		30.1
(3)
A 		28
C 3
(-3)
A 		8.6
(0.3)
A 		10.6
(1.4)
A 		13.3
(3)
A 		5.2
(-1.7)
A 		9.1
(0.6)
A 		10
avr 9.1
(-0.1) 		6.6
(-1.4) 		14
(2.4) 		15.1
(3) 		3.5
(-3) 		14.6
(2.7) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.5
(3)
A 		1.8
(-1.9)
A 		1.9
(-1.6)
A 		1.4
(-3)
A 		2
B 2.2
(-2.4)
A 		14.9
(3)
A 		1.7
(-2.6)
A 		0.7
(-3)
A 		14
C 2.1
(-1.4)
A 		6.3
(3)
A 		2.5
(-1)
A 		0.6
(-3)
A 		6
avr 2.6
(-1.5) 		7.7
(3) 		2
(-2) 		0.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1
(-2.8)
A 		1.5
(-2.3)
A 		6.1
(2.1)
A 		7
(3)
A 		0.8
(-3)
A 		1.1
(-2.7)
A 		6
B 6.6
(0.3)
A 		2.3
(-2.1)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		1.1
(-2.8)
A 		11.2
(3)
A 		10
C 1.1
(-3)
A 		2.6
(1.5)
A 		2.7
(1.8)
A 		2.7
(1.8)
A 		1.7
(-1.2)
A 		3.1
(3)
A 		2
avr 2.9
(-0.4) 		2.1
(-1.6) 		3.2
(0.1) 		3.6
(0.7) 		1.2
(-3) 		5.1
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172512_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10869
Sequence Type Exemplar sequence
Representative Public ID R08C7.11 NCBI
Target Description R08C7.11 /REP_DB=WormBase Gene ID /WP=CE07434 /TR=Q21846 /GB=AAC48079.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068171(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068171 NCBI Caenorhabditis elegans R08C7.11 (R08C7.11) mRNA, complete cds. 11/11 None
R08C7.11 ENSEMBL cdna:known chromosome:CEL140:IV:4454766:4454930:-1 gene:R08C7.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4454771-4454936(-) 81.21 100.0
Public Domain and Genome References
Gene Title
Ensembl R08C7.11
Entrez Gene 187698 Entrez gene
SwissProt Q21846 EMBL-EBI
WormBase CE07434 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172512_X_AT
atgcagagaaattcggaaaattcgaaaaatggtcggagggtgtcttcttcttcttatatg
tctgctgctgctgctgctggggctgctgctgccctccgactgtctgtagacgcccgcgcg
ggaaaggagtacacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAGAGAAATTCGGAAAATTCGA 370 41 13 Antisense
AAATGGTCGGAGGGTGTCTTCTTCT 192 119 39 Antisense
TGTCTTCTTCTTCTTATATGTCTGC 356 559 53 Antisense
TCTTCTTCTTCTTATATGTCTGCTG 383 617 55 Antisense
TTCTTCTTCTTATATGTCTGCTGCT 233 691 57 Antisense
TTCTTATATGTCTGCTGCTGCTGCT 223 689 63 Antisense
CTGTAGACGCCCGCGCGGGAAAGGA 678 233 116 Antisense
GTAGACGCCCGCGCGGGAAAGGAGT 100 363 118 Antisense
TAGACGCCCGCGCGGGAAAGGAGTA 674 599 119 Antisense
GACGCCCGCGCGGGAAAGGAGTACA 208 379 121 Antisense
CGCCCGCGCGGGAAAGGAGTACACG 288 257 123 Antisense
Sequence Source Affymetrix Proprietary Database