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[172510_x_at]

Description Y17G9B.6 /REP_DB=WormBase Gene ID /WP=CE24185 /TR=Q9N578 /GB=AAF60447.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 75.2
(-2.8)
A 		121.6
(-1)
A 		69.7
(-3)
A 		227.5
(3)
P 		158
B 88.9
(2.1)
A 		43.6
(-2.1)
P 		33.6
(-3)
A 		99.2
(3)
A 		66
C 99
(-1.7)
M 		93.9
(-1.9)
A 		64.2
(-3)
A 		224.5
(3)
P 		160
avr 87.7
(-1.5) 		86.4
(-1.6) 		55.8
(-3) 		183.7
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 102.7
(3)
A 		88.6
(2.1)
A 		32.6
(-1.5)
A 		9
(-3)
A 		52
(-0.2)
A 		56.7
(0.1)
A 		94
B 55.4
(0.9)
A 		63.9
(1.6)
A 		79.5
(3)
A 		10.9
(-3)
A 		47.9
(0.2)
A 		43.1
(-0.2)
A 		69
C 10.1
(-3)
A 		102.6
(3)
P 		73.4
(1.1)
A 		68
(0.8)
A 		34.8
(-1.4)
A 		54.8
(-0.1)
A 		93
avr 56.1
(-0.1) 		85
(3) 		61.8
(0.5) 		29.3
(-3) 		44.9
(-1.3) 		51.5
(-0.6) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 27.4
(0.7)
A 		26.4
(0.3)
A 		18.2
(-3)
A 		33.3
(3)
P 		15
B 28.3
(3)
A 		10.8
(-2.1)
P 		7.8
(-3)
A 		21.1
(0.9)
A 		21
C 32.8
(1)
M 		27
(-1.2)
A 		22.4
(-3)
A 		37.9
(3)
P 		16
avr 29.5
(2.5) 		21.4
(-0.8) 		16.1
(-3) 		30.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 18.9
(0.4)
A 		31.5
(3)
A 		7.1
(-2)
A 		2.3
(-3)
A 		15.7
(-0.2)
A 		13.8
(-0.6)
A 		29
B 19.3
(2.3)
A 		21.3
(3)
A 		19.3
(2.3)
A 		2.9
(-3)
A 		19.5
(2.4)
A 		16.1
(1.3)
A 		18
C 3.7
(-3)
A 		31.3
(3)
P 		18.7
(0.3)
A 		13.7
(-0.8)
A 		11.3
(-1.3)
A 		18.4
(0.2)
A 		28
avr 14
(-0.9) 		28
(3) 		15
(-0.6) 		6.3
(-3) 		15.5
(-0.5) 		16.1
(-0.3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172510_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10714
Sequence Type Exemplar sequence
Representative Public ID Y17G9B.6 NCBI
Target Description Y17G9B.6 /REP_DB=WormBase Gene ID /WP=CE24185 /TR=Q9N578 /GB=AAF60447.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068232 NCBI Caenorhabditis elegans Y17G9B.6 (Y17G9B.6) mRNA, complete cds. 11/11 None
Y17G9B.6 ENSEMBL cdna:known chromosome:CEL140:IV:4753589:4754384:-1 gene:Y17G9B.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043796 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4753594-4754390(-) 83.54 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G9B.6
Entrez Gene 189468 Entrez gene
SwissProt Q9N578 EMBL-EBI
WormBase CE24185 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500633 Y17G9B.6 [Caenorhabditis elegans] gb|AAF60447.1| Hypothetical protein Y17G9B.6 [Caenorhabditis elegans] 3.0E-70
Sequence
Target Sequence 
>C. ELEGANS:172510_X_AT
tcaacagtccttccaacaattctcatttgaatattgttatcattcaaataccccatcttt
gccattttcagccattttcagcttatactggcttctccacccattttcagcttctactgg
cttctccaagggacctcagtccgattacagaacactgatctccacctactaccaacagtc
cttccaacaattctcatttgaatattgttatcattcaaataccccatctttggtttctct
ttttttcagccatcttcagccatttttagccattttcagccattttcagccattttcagc
ttctgctggcttctccaagggacctcagtccgattccagaacactgatctccacctactc
ccaacagtccttccagcaattctcatttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACAGTCCTTCCAACAATTCTCA 191 631 57 Antisense
CCATCTTTGCCATTTTCAGCCATTT 433 271 109 Antisense
TTTCAGCTTATACTGGCTTCTCCAC 209 673 132 Antisense
CCATTTTCAGCTTCTACTGGCTTCT 145 271 157 Antisense
TTACAGAACACTGATCTCCACCTAC 528 683 201 Antisense
CAAATACCCCATCTTTGGTTTCTCT 290 155 272 Antisense
TGGTTTCTCTTTTTTTCAGCCATCT 300 551 287 Antisense
AGCCATCTTCAGCCATTTTTAGCCA 2 85 304 Antisense
TTTTAGCCATTTTCAGCCATTTTCA 632 675 320 Antisense
TTTTCAGCCATTTTCAGCTTCTGCT 174 677 339 Antisense
GTCCTTCCAGCAATTCTCATTTGAA 193 477 423 Antisense
Sequence Source Affymetrix Proprietary Database