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[172509_at]

Description M01A12.2 /REP_DB=WormBase Gene ID /WP=CE12240 /TR=P91395 /GB=AAB42220.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 53      4grp_high_8_8 > 13      6grp_total > 20      4grp_total > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 308
1 2 3 4 range
A 56.8
(-2.4)
P 		52
(-2.5)
A 		35.1
(-3)
A 		253.6
(3)
P 		219
B 63.4
(1)
P 		66.3
(1.3)
P 		23.6
(-3)
A 		82.7
(3)
P 		59
C 37.1
(-2.4)
P 		4.6
(-3)
A 		33.4
(-2.4)
P 		312.8
(3)
P 		308
avr 52.4
(-2.3) 		41
(-2.7) 		30.7
(-3) 		216.4
(3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 34.8
(-2.4)
A 		27.4
(-2.9)
P 		119.7
(3)
P 		25.4
(-3)
A 		37.8
(-2.2)
A 		27.9
(-2.8)
M 		94
B 55.3
(1.6)
P 		45.2
(-1.8)
P 		41.7
(-3)
P 		59.6
(3)
P 		43.1
(-2.5)
P 		51.6
(0.3)
P 		18
C 33.3
(-2.6)
P 		112
(3)
P 		30.3
(-2.8)
A 		61.4
(-0.6)
P 		27.6
(-3)
A 		45.9
(-1.7)
M 		84
avr 41.1
(-1.9) 		61.5
(2.5) 		63.9
(3) 		48.8
(-0.3) 		36.2
(-3) 		41.8
(-1.8) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 20.7
(-0.5)
P 		11.3
(-2.5)
A 		9.2
(-3)
A 		37.1
(3)
P 		28
B 20.2
(3)
P 		16.4
(1.4)
P 		5.5
(-3)
A 		17.6
(1.9)
P 		15
C 12.3
(-1.7)
P 		1.3
(-3)
A 		11.6
(-1.8)
P 		52.7
(3)
P 		51
avr 17.7
(-1) 		9.7
(-2.8) 		8.8
(-3) 		35.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 6.4
(-3)
A 		9.7
(-2)
P 		26.1
(3)
P 		6.5
(-3)
A 		11.4
(-1.5)
A 		6.8
(-2.9)
M 		20
B 19.3
(3)
P 		15.1
(0.3)
P 		10.1
(-3)
P 		15.8
(0.7)
P 		17.5
(1.8)
P 		19.3
(3)
P 		9
C 12.3
(-2)
P 		34.2
(3)
P 		7.7
(-3)
A 		12.3
(-2)
P 		8.9
(-2.7)
A 		15.4
(-1.3)
M 		27
avr 12.7
(-2.1) 		19.7
(3) 		14.6
(-0.7) 		11.5
(-3) 		12.6
(-2.2) 		13.8
(-1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1094
Sequence Type Exemplar sequence
Representative Public ID M01A12.2 NCBI
Target Description M01A12.2 /REP_DB=WormBase Gene ID /WP=CE12240 /TR=P91395 /GB=AAB42220.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) M01A12.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M01A12.2 M01A12.2 /REP_DB=WormBase Gene ID /WP=CE12240 /TR=P91395 /GB=AAB42220.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172509_AT
tacagtctcatatacattacctcctttcttgcaggaagaaagccagcctacatgcatcac
tgtggagactctgtggagagggaggaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGTCTCATATACATTACCTCCT 424 643 16 Antisense
CAGTCTCATATACATTACCTCCTTT 669 207 18 Antisense
TCATATACATTACCTCCTTTCTTGC 530 619 23 Antisense
TACATTACCTCCTTTCTTGCAGGAA 381 645 28 Antisense
ATTACCTCCTTTCTTGCAGGAAGAA 667 1 31 Antisense
GCAGGAAGAAAGCCAGCCTACATGC 606 309 46 Antisense
AAGAAAGCCAGCCTACATGCATCAC 284 153 51 Antisense
CCAGCCTACATGCATCACTGTGGAG 357 273 58 Antisense
ACATGCATCACTGTGGAGACTCTGT 188 107 65 Antisense
GCATCACTGTGGAGACTCTGTGGAG 473 309 69 Antisense
GAGACTCTGTGGAGAGGGAGGAGGC 363 393 80 Antisense
Sequence Source Affymetrix Proprietary Database