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[172508_x_at]

Description F07G11.7 /REP_DB=WormBase Gene ID /WP=CE09227 /TR=O16234 /GB=AAG24052.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 57.1
(-0.9)
A 		2
(-3)
A 		5.3
(-2.9)
A 		163.2
(3)
P 		161
B 44.7
(-2.1)
A 		46
(-1.9)
A 		38.1
(-3)
A 		81.9
(3)
A 		44
C 6.9
(-3)
A 		11.3
(-2.9)
A 		23.5
(-2.7)
A 		362
(3)
P 		355
avr 36.2
(-2.5) 		19.8
(-3) 		22.3
(-2.9) 		202.4
(3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 79.4
(0.3)
A 		31.2
(-1.8)
A 		82.5
(0.5)
P 		140.5
(3)
P 		107.8
(1.6)
P 		3.3
(-3)
A 		137
B 44.9
(-2.4)
P 		20.2
(-3)
A 		102.1
(-0.9)
P 		249.3
(3)
P 		139.8
(0.1)
P 		25.1
(-2.9)
A 		229
C 56.8
(-1.8)
A 		38.1
(-2.2)
P 		33.9
(-2.3)
A 		262.5
(3)
P 		118.6
(-0.3)
P 		3.8
(-3)
A 		259
avr 60.4
(-1.6) 		29.8
(-2.4) 		72.8
(-1.2) 		217.4
(3) 		122.1
(0.2) 		10.7
(-3) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 20.8
(2.2)
A 		0.4
(-3)
A 		1.4
(-2.7)
A 		23.9
(3)
P 		24
B 14.3
(0.8)
A 		11.4
(-1.2)
A 		8.8
(-3)
A 		17.5
(3)
A 		9
C 2.3
(-3)
A 		3.3
(-2.9)
A 		8.2
(-2.4)
A 		61
(3)
P 		59
avr 12.5
(-1.5) 		5
(-3) 		6.1
(-2.8) 		34.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 14.6
(-0.6)
A 		11.1
(-1.2)
A 		18
(-0)
P 		35.6
(3)
P 		32.5
(2.5)
P 		0.8
(-3)
A 		35
B 15.6
(-2.1)
P 		6.7
(-3)
A 		24.8
(-1.2)
P 		66
(3)
P 		56.8
(2.1)
P 		9.4
(-2.7)
A 		59
C 21
(-0.7)
A 		11.6
(-1.8)
P 		8.6
(-2.1)
A 		52.8
(3)
P 		38.4
(1.3)
P 		1.3
(-3)
A 		52
avr 17.1
(-1.3) 		9.8
(-2.2) 		17.1
(-1.3) 		51.5
(3) 		42.6
(1.9) 		3.8
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172508_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11381
Sequence Type Exemplar sequence
Representative Public ID F07G11.7 NCBI
Target Description F07G11.7 /REP_DB=WormBase Gene ID /WP=CE09227 /TR=O16234 /GB=AAG24052.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072458 NCBI Caenorhabditis elegans F07G11.7 (F07G11.7) mRNA, complete cds. 11/11 None
GENEFINDER00000010046 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7305176:7306341:-1 9/11 None
F07G11.7 ENSEMBL cdna:known chromosome:CEL140:V:7305674:7306519:-1 gene:F07G11.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072447 4/11 Cross Hyb Matching Probes A 
NM_072457 7/11 Cross Hyb Matching Probes A 
SNAP00000010038 5/11 Cross Hyb Matching Probes None
GENEFINDER00000010044 7/11 Cross Hyb Matching Probes None
SNAP00000044270 4/11 Cross Hyb Matching Probes None
GENEFINDER00000044277 4/11 Cross Hyb Matching Probes None
C13A2.10 4/11 Cross Hyb Matching Probes A 
F07G11.2 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7305674-7306520(-) 100.0 100.0
chrV:7276751-7277460(-) 77.83 77.83
Public Domain and Genome References
Gene Title
Ensembl F07G11.7
Entrez Gene 184160 Entrez gene
SwissProt O16234 EMBL-EBI
WormBase CE09227 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504859 F07G11.7 [Caenorhabditis elegans] gb|AAG24052.1| Hypothetical protein F07G11.7 [Caenorhabditis elegans] 1.0E-127
blast NP_504859 F07G11.7 [Caenorhabditis elegans] gb|AAG24052.1| Hypothetical protein F07G11.7 [Caenorhabditis elegans] 2.0E-96
blast AAB69882 Hypothetical protein C13A2.10 [Caenorhabditis elegans] ref|NP_504848.1| C13A2.10 [Caenorhabditis elegans] 5.0E-86
blast NP_504858 F07G11.2 [Caenorhabditis elegans] gb|AAG24049.1| Hypothetical protein F07G11.2 [Caenorhabditis elegans] 4.0E-76
blast AAB69882 Hypothetical protein C13A2.10 [Caenorhabditis elegans] ref|NP_504848.1| C13A2.10 [Caenorhabditis elegans] 2.0E-71
blast NP_504858 F07G11.2 [Caenorhabditis elegans] gb|AAG24049.1| Hypothetical protein F07G11.2 [Caenorhabditis elegans] 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 5.8E-54
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 5.8E-54
Sequence
Target Sequence 
>C. ELEGANS:172508_X_AT
caagcttttcacgattgcttccttccgaaacttgaaacaatcacggaaagctatcgcaga
ttttggtatgaatttgcaaacgtaacaaaggattgtgacaacttgaaagagtacaatttt
cttgatatccaagccgcaaaaaataaggacgaagtcaagtatgtggtgtttccaaaaaag
aataatgaaccgctgacaatggttactcttggaattggacgtgatatccgagcagagctc
agactgaaagcgatgtaccctaacctagcttttcacggagcgggcccgggtgttgctgtg
aacaaagatctatacgaaagcacgttgggtgggaaattctacaattatgcagttagtgga
caaaacggtatacatatatccaaaatctttcttgaacgaaactctacagtagatgcaact
aaacacattcgagccgattatttcttcagaaaaatacttaataaaaacagaatagacaat
ccgcacaaattgattgccgatgctgtgctccgatcaaaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCTTTTCACGATTGCTTCCTTC 110 187 88 Antisense
GATTGCTTCCTTCCGAAACTTGAAA 645 433 100 Antisense
GAACCGCTGACAATGGTTACTCTTG 456 345 274 Antisense
GGACGTGATATCCGAGCAGAGCTCA 533 523 304 Antisense
GAAAGCGATGTACCCTAACCTAGCT 433 359 333 Antisense
TAACCTAGCTTTTCACGGAGCGGGC 671 629 348 Antisense
GCAACTAAACACATTCGAGCCGATT 657 319 502 Antisense
CATTCGAGCCGATTATTTCTTCAGA 188 217 513 Antisense
AACAGAATAGACAATCCGCACAAAT 222 135 553 Antisense
AAATTGATTGCCGATGCTGTGCTCC 526 115 574 Antisense
CGATGCTGTGCTCCGATCAAAAGAA 366 249 585 Antisense
Sequence Source Affymetrix Proprietary Database