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[172506_x_at]

Description E03H12.5 /REP_DB=WormBase Gene ID /WP=CE09144 /TR=O02124 /GB=AAC47980.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 50      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 43.2
(-3)
A 		53
(-1.2)
A 		75.4
(3)
A 		54.8
(-0.8)
A 		32
B 41.1
(0.6)
A 		63.2
(3)
A 		45.9
(1.1)
A 		7.6
(-3)
A 		56
C 32.4
(-3)
A 		76.1
(3)
A 		52.6
(-0.2)
A 		52.1
(-0.3)
A 		44
avr 38.9
(-2.8) 		64.1
(3) 		58
(1.6) 		38.2
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 81.5
(-0.5)
A 		5.8
(-3)
A 		21.6
(-2.5)
A 		95.3
(-0.1)
A 		189.7
(3)
P 		163
(2.1)
P 		184
B 52
(-2)
A 		20.4
(-3)
A 		27.5
(-2.8)
A 		21.5
(-3)
A 		118.3
(0.2)
P 		205.2
(3)
P 		185
C 15.3
(-2.9)
A 		40
(-2.2)
A 		10
(-3)
A 		40.6
(-2.1)
A 		197.2
(2.3)
P 		222.1
(3)
P 		212
avr 49.6
(-2) 		22.1
(-2.9) 		19.7
(-3) 		52.5
(-1.9) 		168.4
(2) 		196.8
(3) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 15.7
(0.9)
A 		11.5
(-1.2)
A 		19.7
(3)
A 		8
(-3)
A 		12
B 13.1
(1.9)
A 		15.6
(3)
A 		10.6
(0.9)
A 		1.6
(-3)
A 		14
C 10.7
(-2.1)
A 		21.9
(3)
A 		18.3
(1.4)
A 		8.8
(-3)
A 		13
avr 13.2
(1.2) 		16.3
(3) 		16.2
(2.9) 		6.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 15
(-1.6)
A 		2.1
(-3)
A 		4.7
(-2.7)
A 		24.2
(-0.6)
A 		57.2
(3)
P 		39.7
(1.1)
P 		55
B 18.1
(-1.9)
A 		6.8
(-2.9)
A 		6.7
(-2.9)
A 		5.7
(-3)
A 		48.1
(0.6)
P 		76.5
(3)
P 		71
C 5.7
(-2.7)
A 		12.2
(-2.2)
A 		2.5
(-3)
A 		8.2
(-2.5)
A 		63.8
(2.1)
P 		74.4
(3)
P 		72
avr 12.9
(-2.2) 		7
(-2.8) 		4.6
(-3) 		12.7
(-2.2) 		56.4
(2.3) 		63.5
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172506_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10478
Sequence Type Exemplar sequence
Representative Public ID E03H12.5 NCBI
Target Description E03H12.5 /REP_DB=WormBase Gene ID /WP=CE09144 /TR=O02124 /GB=AAC47980.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068288(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068288 NCBI Caenorhabditis elegans E03H12.5 (E03H12.5) mRNA, complete cds. 11/11 None
SNAP00000020609 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4977266:4977921:1 11/11 None
GENEFINDER00000020617 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4977266:4977985:1 11/11 None
E03H12.5 ENSEMBL cdna:known chromosome:CEL140:IV:4977247:4978009:1 gene:E03H12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059518 4/11 Cross Hyb Matching Probes A 
SNAP00000020981 4/11 Cross Hyb Matching Probes None
GENEFINDER00000020987 4/11 Cross Hyb Matching Probes None
T23B3.5 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4977271-4977991(+) 47.39 100.0
chrI:6713707-6714421(-) 34.91 93.36
Public Domain and Genome References
Gene Title
Ensembl E03H12.5
Entrez Gene 177262 Entrez gene
SwissProt O02124 EMBL-EBI
WormBase CE09144 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172506_X_AT
gttcgactacctgcattttgcacttctactcgttgctccacttgctgtacttattggatg
tggaggaaagaaaaagccaccaccgccaaaatcggcttccaaaatgggtccacctccacc
agcaccagcaccacccactgctccggaggctactccagcggcgccagccccagatgcagc
tgccgcggctcctgctgaaggagagaagaaggatggtgataagaagagcgagaaaaagga
cggagataaaaaggaagaggagaaaaaggatgaagagaagaaggatggagacaaaaaaga
ggatgataagaaggatgaaaagaaggacgaggacaagaaggacgagaaaaaggatgcgga
tgagaagaaggatgaagagaaaaaggatgacaagaaggatgaaaagaaagacgagaaaaa
agatgaaaagaaagaaaagtccaagaaatccaagaagtcaagcaaatccaaaaagtccaa
aaagtccaagcgagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGACTACCTGCATTTTGCACTT 464 441 21 Antisense
TGCATTTTGCACTTCTACTCGTTGC 502 579 32 Antisense
TTGCTCCACTTGCTGTACTTATTGG 380 701 53 Antisense
GCTGTACTTATTGGATGTGGAGGAA 219 295 64 Antisense
TGGAGGAAAGAAAAAGCCACCACCG 91 547 81 Antisense
CACCGCCAAAATCGGCTTCCAAAAT 511 199 101 Antisense
ATCGGCTTCCAAAATGGGTCCACCT 600 21 111 Antisense
CCGCGGCTCCTGCTGAAGGAGAGAA 351 263 203 Antisense
AAGTCCAAGAAATCCAAGAAGTCAA 114 157 457 Antisense
AAGTCAAGCAAATCCAAAAAGTCCA 113 157 475 Antisense
AAGTCCAAAAAGTCCAAGCGAGAGA 115 157 493 Antisense
Sequence Source Affymetrix Proprietary Database