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[172504_x_at]

Description F59E12.4 /REP_DB=WormBase Gene ID /WP=CE17144 /TR=O01896 /GB=AAB54254.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 56      6grp_total > 84      4grp_total > 32      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1618
1 2 3 4 range
A 1957.7
(-3)
P 		2018.9
(-2.5)
P 		2758.4
(3)
P 		2258.7
(-0.7)
P 		801
B 2300.2
(-3)
P 		2541.8
(-1.6)
P 		3332.4
(3)
P 		2484.4
(-1.9)
P 		1032
C 1815.3
(-2.4)
P 		1714.2
(-3)
P 		2666.6
(2.3)
P 		2786.2
(3)
P 		1072
avr 2024.4
(-3) 		2091.6
(-2.5) 		2919.1
(3) 		2509.8
(0.3) 		895

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1461
1 2 3 4 5 6 range
A 2071.9
(-2.5)
P 		2033.5
(-3)
P 		2145.8
(-1.4)
P 		2455.1
(2.9)
P 		2463.7
(3)
P 		2451.4
(2.8)
P 		430
B 1426.1
(-3)
P 		1913.5
(-1)
P 		2140.2
(-0.1)
P 		2887.4
(3)
P 		2568.3
(1.7)
P 		2168.7
(0)
P 		1461
C 2151.6
(0.8)
P 		2030.2
(-0.1)
P 		2462.9
(3)
P 		1614.9
(-3)
P 		2115.9
(0.5)
P 		2249.5
(1.5)
P 		848
avr 1883.2
(-3) 		1992.4
(-1.7) 		2249.6
(1.4) 		2319.1
(2.2) 		2382.6
(3) 		2289.9
(1.9) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 599
1 2 3 4 range
A 712.8
(2.9)
P 		438.2
(-1.3)
P 		721.1
(3)
P 		330.6
(-3)
P 		391
B 733.5
(2)
P 		627.8
(-0.6)
P 		772.2
(3)
P 		529.4
(-3)
P 		243
C 600.9
(-1.3)
P 		492.8
(-2.7)
P 		929.4
(3)
P 		469.8
(-3)
P 		460
avr 682.4
(0.9) 		519.6
(-1.7) 		807.6
(3) 		443.3
(-3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 719
1 2 3 4 5 6 range
A 381.9
(-3)
P 		723.2
(2.7)
P 		467.3
(-1.6)
P 		622.7
(1)
P 		743.4
(3)
P 		596.8
(0.6)
P 		362
B 496.2
(-3)
P 		636.9
(-1.5)
P 		519.7
(-2.7)
P 		764.8
(-0.1)
P 		1043.5
(3)
P 		808.7
(0.4)
P 		547
C 797.5
(3)
P 		619.5
(0.7)
P 		626.8
(0.8)
P 		324.8
(-3)
P 		684.7
(1.6)
P 		753
(2.4)
P 		473
avr 558.5
(-2.6) 		659.9
(-0.4) 		537.9
(-3) 		570.8
(-2.3) 		823.9
(3) 		719.5
(0.8) 		286
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172504_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5086
Sequence Type Exemplar sequence
Representative Public ID F59E12.4 NCBI
Target Description F59E12.4 /REP_DB=WormBase Gene ID /WP=CE17144 /TR=O01896 /GB=AAB54254.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062693(10), NM_062692(9), NM_062696(11), NM_062695(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062693 NCBI Caenorhabditis elegans F59E12.5a (F59E12.5) mRNA, complete cds. 10/11 A 
NM_062692 NCBI Caenorhabditis elegans F59E12.5b (F59E12.5) mRNA, complete cds. 9/11 A 
NM_062696 NCBI Caenorhabditis elegans F59E12.4a (F59E12.4) mRNA, complete cds. 11/11 A 
NM_062695 NCBI Caenorhabditis elegans F59E12.4b (F59E12.4) mRNA, complete cds. 10/11 None
SNAP00000018059 ENSEMBL cdna:SNAP chromosome:CEL140:II:5622866:5624686:1 10/11 None
SNAP00000018062 ENSEMBL cdna:SNAP chromosome:CEL140:II:5631328:5633167:1 11/11 None
GENEFINDER00000018079 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5631328:5633167:1 11/11 None
GENEFINDER00000018081 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5622866:5624686:1 10/11 None
F59E12.5a.2 ENSEMBL cdna:known chromosome:CEL140:II:5622858:5624815:1 gene:F59E12.5 10/11 A 
F59E12.5a.1 ENSEMBL cdna:known chromosome:CEL140:II:5622862:5624815:1 gene:F59E12.5 10/11 A 
F59E12.5b ENSEMBL cdna:known chromosome:CEL140:II:5622866:5624771:1 gene:F59E12.5 9/11 A 
F59E12.4b ENSEMBL cdna:known chromosome:CEL140:II:5631326:5633189:1 gene:F59E12.4 10/11 None
F59E12.4a ENSEMBL cdna:known chromosome:CEL140:II:5631328:5633233:1 gene:F59E12.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077570 3/11 Cross Hyb Matching Probes A 
GENEFINDER00000010982 3/11 Cross Hyb Matching Probes None
SNAP00000010975 3/11 Cross Hyb Matching Probes None
C40H5.6 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5629625-5633165(+) 100.0 100.0
chrII:5622859-5624684(+) 87.49 87.49
Public Domain and Genome References
Ensembl F59E12.5
F59E12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54255 Hypothetical protein F59E12.5a [Caenorhabditis elegans] ref|NP_495094.1| F59E12.5a [Caenorhabditis elegans] 0.0
blast AAK82899 Hypothetical protein F59E12.5b [Caenorhabditis elegans] ref|NP_495093.1| F59E12.5b [Caenorhabditis elegans] 0.0
blast AAK82897 Hypothetical protein F59E12.4a [Caenorhabditis elegans] ref|NP_495097.1| F59E12.4a [Caenorhabditis elegans] 0.0
blast AAK82898 Hypothetical protein F59E12.4b [Caenorhabditis elegans] ref|NP_495096.1| F59E12.4b [Caenorhabditis elegans] 0.0
blast T15260 hypothetical protein F59E12.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007716 EMBL-EBI NPL4, putative zinc binding 3.5E-54
Pfam IPR001876 EMBL-EBI Zn-finger, Ran-binding 2.7E-4
Pfam IPR007717 EMBL-EBI NPL4 1.0E-126
Pfam IPR001876 EMBL-EBI Zn-finger, Ran-binding 1.0E-4
Pfam IPR001876 EMBL-EBI Zn-finger, Ran-binding 2.7E-4
Pfam IPR001876 EMBL-EBI Zn-finger, Ran-binding 1.0E-4
Sequence
Target Sequence 
>C. ELEGANS:172504_X_AT
acggacgaccacttccagttgaatatttgctggtggatgttcctgctggaatgccaaaag
agcctcactacacgttccacgttggcacatctaataaatcgaagagtgccaaatttaatg
ttgaaaatcgacaagcaattggacaacttcaaggaggtgcaaatttgattcaatattcat
ccgaattctctaaaaatcaatttttggaacaggctacaaacttccactttttgctctatt
tagtaaccaatgaccaagtgcagatttctgatgaatggatgaaacgattgtgtgatgcag
ttaaagctcaggacagaggaactgcaatggaatgggctcaggaatgtgaagattggcatc
agttgatggctttagcgcatgctaatggaggaagcggcaatgacgatattcctgtcattc
caaatggtgatcctttctccggatcaagcagtggtggatcaggaggagctgtgtggaact
gtggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGACGACCACTTCCAGTTGAATA 11 93 1265 Antisense
TTTGCTGGTGGATGTTCCTGCTGGA 388 667 1290 Antisense
GCCAAAAGAGCCTCACTACACGTTC 213 279 1317 Antisense
CACGTTCCACGTTGGCACATCTAAT 646 199 1335 Antisense
GAACAGGCTACAAACTTCCACTTTT 336 337 1471 Antisense
AACTTCCACTTTTTGCTCTATTTAG 44 139 1483 Antisense
GCATCAGTTGATGGCTTTAGCGCAT 342 309 1620 Antisense
GACGATATTCCTGTCATTCCAAATG 37 379 1666 Antisense
ATTCCAAATGGTGATCCTTTCTCCG 619 7 1681 Antisense
TCCTTTCTCCGGATCAAGCAGTGGT 56 591 1695 Antisense
GGAGGAGCTGTGTGGAACTGTGGAC 579 515 1726 Antisense
Sequence Source Affymetrix Proprietary Database