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[172503_x_at]

Description W08E12.3 /REP_DB=WormBase Gene ID /WP=CE21278 /TR=Q9N5B1 /GB=AAF39988.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 54      6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2424
1 2 3 4 range
A 36.8
(-3)
A 		1607.6
(2.3)
P 		1821.2
(3)
P 		87.4
(-2.8)
A 		1784
B 81.2
(-2.9)
A 		2342.5
(3)
P 		1877.2
(1.8)
P 		59.2
(-3)
A 		2283
C 98.5
(-2.9)
A 		2461.1
(3)
P 		1728
(1.2)
P 		70.2
(-3)
A 		2391
avr 72.2
(-3) 		2137.1
(3) 		1808.8
(2) 		72.3
(-3) 		2065

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1246
1 2 3 4 5 6 range
A 653.5
(-3)
P 		1465.3
(1.4)
P 		1277.8
(0.4)
P 		1656.6
(2.4)
P 		1762.6
(3)
P 		1189.2
(-0.1)
P 		1109
B 645.6
(-3)
P 		1421.4
(0.7)
P 		1395.1
(0.6)
P 		1477.9
(1)
P 		1891.7
(3)
P 		1042.4
(-1.1)
P 		1246
C 726.1
(-3)
P 		1309.7
(0)
P 		1324.4
(0.1)
P 		1615.8
(1.6)
P 		1891.3
(3)
P 		1132.4
(-0.9)
P 		1165
avr 675.1
(-3) 		1398.8
(0.7) 		1332.4
(0.4) 		1583.4
(1.6) 		1848.5
(3) 		1121.3
(-0.7) 		1173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 696
1 2 3 4 range
A 13.4
(-3)
A 		349
(1.4)
P 		476.1
(3)
P 		12.8
(-3)
A 		463
B 25.9
(-2.9)
A 		578.5
(3)
P 		435
(1.5)
P 		12.6
(-3)
A 		566
C 32.6
(-2.8)
A 		707.6
(3)
P 		602.3
(2.1)
P 		11.8
(-3)
A 		696
avr 24
(-2.9) 		545
(3) 		504.5
(2.5) 		12.4
(-3) 		533

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 648
1 2 3 4 5 6 range
A 120.5
(-3)
P 		521.2
(2.8)
P 		278.3
(-0.7)
P 		420.2
(1.4)
P 		531.9
(3)
P 		289.5
(-0.5)
P 		411
B 224.6
(-3)
P 		473.1
(-0.3)
P 		338.8
(-1.7)
P 		391.5
(-1.2)
P 		768.6
(3)
P 		388.7
(-1.2)
P 		544
C 269.1
(-3)
P 		399.6
(-0.7)
P 		337.1
(-1.8)
P 		324.9
(-2)
P 		612
(3)
P 		379.1
(-1.1)
P 		343
avr 204.7
(-3) 		464.6
(0.6) 		318.1
(-1.4) 		378.9
(-0.6) 		637.5
(3) 		352.4
(-1) 		433
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172503_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10805
Sequence Type Exemplar sequence
Representative Public ID W08E12.3 NCBI
Target Description W08E12.3 /REP_DB=WormBase Gene ID /WP=CE21278 /TR=Q9N5B1 /GB=AAF39988.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067914 NCBI Caenorhabditis elegans W08E12.3 (W08E12.3) mRNA, complete cds. 11/11 None
SNAP00000023323 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3304004:3304477:1 11/11 None
GENEFINDER00000023327 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3304004:3304477:1 11/11 None
W08E12.3 ENSEMBL cdna:known chromosome:CEL140:IV:3303976:3304492:1 gene:W08E12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067915 2/11 Cross Hyb Matching Probes A 
NM_067913 4/11 Cross Hyb Matching Probes A 
NM_067912 4/11 Cross Hyb Matching Probes A 
SNAP00000023321 4/11 Cross Hyb Matching Probes None
SNAP00000023322 4/11 Cross Hyb Matching Probes None
SNAP00000023324 2/11 Cross Hyb Matching Probes None
GENEFINDER00000023329 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023332 2/11 Cross Hyb Matching Probes None
GENEFINDER00000023334 4/11 Cross Hyb Matching Probes None
W08E12.5 4/11 Cross Hyb Matching Probes A 
W08E12.4 4/11 Cross Hyb Matching Probes A 
W08E12.2 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3304009-3304483(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08E12.3
Entrez Gene 177098 Entrez gene
SwissProt Q9N5B1 EMBL-EBI
WormBase CE21278 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Sequence
Target Sequence 
>C. ELEGANS:172503_X_AT
gtcggctcaatgcttcggaggtggatgcggaggaggaccaatcttccttccaccaccacc
atgcttcggaggaaactgtggtggatgttcgggtaacaactgtggatgcaatggaaataa
ctgtggaccacaagtcactgtagtccaggtcccgaataacaataacggatgctcgtgcag
cccatgtaacggaccagtttgtgctccaatgtgcaatagctgcccaccacagccgatctt
cattcagccatctcaatgctgcaataataacaacttctcgtgctgcccattccgtttccg
tcgtcataactctgctgccgccgcttcagctgagaacacagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGCTCAATGCTTCGGAGGTGGA 73 473 60 Antisense
TGCGGAGGAGGACCAATCTTCCTTC 56 581 85 Antisense
CACCACCATGCTTCGGAGGAAACTG 191 201 113 Antisense
CACAAGTCACTGTAGTCCAGGTCCC 287 193 188 Antisense
CAATAACGGATGCTCGTGCAGCCCA 676 179 219 Antisense
CAGCCCATGTAACGGACCAGTTTGT 148 203 237 Antisense
AACGGACCAGTTTGTGCTCCAATGT 666 143 247 Antisense
GCTCCAATGTGCAATAGCTGCCCAC 598 297 262 Antisense
ATCTTCATTCAGCCATCTCAATGCT 319 31 295 Antisense
AATAATAACAACTTCTCGTGCTGCC 623 169 322 Antisense
CGCCGCTTCAGCTGAGAACACAGAA 432 257 378 Antisense
Sequence Source Affymetrix Proprietary Database