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[172502_x_at]

Description F23C8.12 /REP_DB=WormBase Gene ID /WP=CE20720 /TR=Q9TXH5 /GB=AAD03132.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 08      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 3.2
(-3)
A 		9.5
(-2.4)
A 		10.9
(-2.3)
A 		69
(3)
A 		66
B 12.7
(-1.3)
A 		4.3
(-3)
A 		27
(1.5)
A 		34.6
(3)
P 		30
C 3.1
(-3)
A 		6.7
(-2.5)
A 		16.7
(-1.3)
A 		50.7
(3)
P 		48
avr 6.3
(-3) 		6.8
(-2.9) 		18.2
(-1.4) 		51.4
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4.7
(-1.9)
A 		15.5
(1.9)
A 		12.9
(1)
A 		1.7
(-3)
A 		18.7
(3)
A 		3.7
(-2.3)
A 		17
B 10
(1.9)
A 		12
(3)
A 		10
(1.9)
A 		11.7
(2.8)
A 		4.7
(-0.8)
A 		0.6
(-3)
A 		11
C 1.7
(-3)
A 		10.8
(-0.2)
A 		17.1
(1.7)
A 		21.4
(3)
A 		2.2
(-2.8)
A 		3.1
(-2.6)
A 		20
avr 5.5
(-1.3) 		12.8
(2.7) 		13.3
(3) 		11.6
(2.1) 		8.5
(0.3) 		2.5
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-3)
A 		2.1
(-2.3)
A 		2.8
(-1.9)
A 		10.1
(3)
A 		9
B 4.1
(-0.1)
A 		1.1
(-3)
A 		6.3
(2)
A 		7.4
(3)
P 		6
C 1
(-3)
A 		1.9
(-2.3)
A 		5.8
(0.8)
A 		8.6
(3)
P 		8
avr 2.1
(-2.7) 		1.7
(-3) 		5
(-0.2) 		8.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.9
(-2.4)
A 		5.5
(2.8)
A 		2.8
(-0.3)
A 		0.4
(-3)
A 		5.7
(3)
A 		0.9
(-2.4)
A 		5
B 3.5
(2.2)
A 		4
(3)
A 		2.4
(0.5)
A 		3.1
(1.6)
A 		1.9
(-0.3)
A 		0.2
(-3)
A 		4
C 0.6
(-3)
A 		3.3
(1.3)
A 		4.4
(3)
A 		4.3
(2.8)
A 		0.7
(-2.8)
A 		1
(-2.4)
A 		4
avr 1.7
(-1.3) 		4.3
(3) 		3.2
(1.2) 		2.6
(0.2) 		2.8
(0.5) 		0.7
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172502_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.118
Sequence Type Exemplar sequence
Representative Public ID F23C8.12 NCBI
Target Description F23C8.12 /REP_DB=WormBase Gene ID /WP=CE20720 /TR=Q9TXH5 /GB=AAD03132.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058581 NCBI Caenorhabditis elegans F23C8.12 (F23C8.12) mRNA, complete cds. 11/11 None
F23C8.12 ENSEMBL cdna:known chromosome:CEL140:I:2451148:2451808:-1 gene:F23C8.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073508 4/11 Cross Hyb Matching Probes A 
SNAP00000018144 4/11 Cross Hyb Matching Probes None
SNAP00000013922 4/11 Cross Hyb Matching Probes None
GENEFINDER00000013941 4/11 Cross Hyb Matching Probes None
T11F9.7 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2451147-2451808(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23C8.12
Entrez Gene 184894 Entrez gene
SwissProt Q9TXH5 EMBL-EBI
WormBase CE20720 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD03132 Hypothetical protein F23C8.12 [Caenorhabditis elegans] ref|NP_490982.1| F23C8.12 [Caenorhabditis elegans] 2.0E-42
blast CAA98531 Hypothetical protein T11F9.7 [Caenorhabditis elegans] ref|NP_505909.1| T11F9.7 [Caenorhabditis elegans] 6.0E-25
blast Q22398 Zinc metalloproteinase nas-22 precursor (Nematode astacin 22) 6.0E-25
Sequence
Target Sequence 
>C. ELEGANS:172502_X_AT
ggttgagaacaacgttggcggtattattttcaacatgaacccagaaaatttgaattttga
aaaaatgacctactcgatggaagacgagtcaagcgccaagtatccatacagagagccaat
gccacgtgcggaaagggtatcaatgaaagctctccaagatgaatggagacacttgtttat
tacacgcgttgagggagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGAGAACAACGTTGGCGGTATT 56 507 15 Antisense
TGGCGGTATTATTTTCAACATGAAC 595 543 30 Antisense
AACATGAACCCAGAAAATTTGAATT 658 131 46 Antisense
AAAATGACCTACTCGATGGAAGACG 161 131 76 Antisense
GAAGACGAGTCAAGCGCCAAGTATC 387 337 94 Antisense
AGTCAAGCGCCAAGTATCCATACAG 257 61 101 Antisense
TACAGAGAGCCAATGCCACGTGCGG 43 643 121 Antisense
TGCCACGTGCGGAAAGGGTATCAAT 70 583 134 Antisense
GGGTATCAATGAAAGCTCTCCAAGA 582 495 149 Antisense
GAGACACTTGTTTATTACACGCGTT 627 391 180 Antisense
GTTTATTACACGCGTTGAGGGAGAA 390 447 189 Antisense
Sequence Source Affymetrix Proprietary Database