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[172501_at]

Description F19B10.3 /REP_DB=WormBase Gene ID /WP=CE09470 /TR=O02070 /GB=AAB52926.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 0.8
(-3)
A 		14.1
(-0.2)
A 		10.8
(-0.9)
A 		29
(3)
A 		28
B 1.3
(-3)
A 		18.2
(3)
A 		3.3
(-2.3)
A 		1.5
(-2.9)
A 		17
C 5.9
(-2.5)
A 		1.8
(-2.9)
A 		0.8
(-3)
A 		58.7
(3)
P 		58
avr 2.7
(-3) 		11.4
(-1.1) 		5
(-2.5) 		29.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 0.2
(-3)
A 		2.1
(-2.7)
A 		16.1
(-0.5)
A 		38.6
(3)
A 		3
(-2.6)
A 		0.9
(-2.9)
A 		38
B 4.1
(3)
A 		3.1
(0.9)
A 		1.3
(-3)
A 		1.7
(-2.1)
A 		2.5
(-0.4)
A 		1.4
(-2.8)
A 		3
C 0.6
(-2.9)
A 		22.5
(3)
A 		1.4
(-2.7)
A 		1.1
(-2.8)
A 		0.4
(-3)
A 		0.5
(-3)
A 		22
avr 1.6
(-2.7) 		9.2
(0.9) 		6.3
(-0.5) 		13.8
(3) 		2
(-2.5) 		0.9
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.3
(-3)
A 		3.1
(1.3)
A 		2.8
(0.8)
A 		4.2
(3)
A 		4
B 0.4
(-2.9)
A 		4.5
(3)
A 		0.8
(-2.3)
A 		0.3
(-3)
A 		4
C 1.9
(-2)
A 		0.5
(-2.9)
A 		0.3
(-3)
A 		9.9
(3)
P 		10
avr 0.9
(-3) 		2.7
(-0.2) 		1.3
(-2.4) 		4.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0
(-3)
A 		0.7
(-2.6)
A 		3.5
(-0.9)
A 		9.8
(3)
A 		0.9
(-2.4)
A 		0.2
(-2.9)
A 		10
B 1.4
(3)
A 		1
(0.8)
A 		0.3
(-3)
A 		0.4
(-2.5)
A 		1
(0.8)
A 		0.5
(-1.9)
A 		1
C 0.2
(-2.9)
A 		6.9
(3)
A 		0.3
(-2.8)
A 		0.2
(-2.9)
A 		0.1
(-3)
A 		0.2
(-2.9)
A 		7
avr 0.5
(-2.6) 		2.9
(1.9) 		1.4
(-0.9) 		3.5
(3) 		0.7
(-2.3) 		0.3
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4256
Sequence Type Exemplar sequence
Representative Public ID F19B10.3 NCBI
Target Description F19B10.3 /REP_DB=WormBase Gene ID /WP=CE09470 /TR=O02070 /GB=AAB52926.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062207(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062207 NCBI Caenorhabditis elegans F19B10.3 (F19B10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000017137 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3664440:3665114:1 11/11 None
F19B10.3 ENSEMBL cdna:known chromosome:CEL140:II:3664764:3665114:1 gene:F19B10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017114 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3664762-3665113(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19B10.3
Entrez Gene 184668 Entrez gene
SwissProt O02070 EMBL-EBI
WormBase CE09470 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52926 Hypothetical protein F19B10.3 [Caenorhabditis elegans] ref|NP_494608.1| F19B10.3 [Caenorhabditis elegans] 3.0E-30
blast AAB52926 Hypothetical protein F19B10.3 [Caenorhabditis elegans] ref|NP_494608.1| F19B10.3 [Caenorhabditis elegans] 4.0E-30
Sequence
Target Sequence 
>C. ELEGANS:172501_AT
atggacatcttttcaggtttattcacacaggtgaataataacaatgaagaagacctgaga
gttgaactacaaaatatgaagcctggtgaaggagtaattcgtgctgaagttggcccgtct
ggcgtagctactttcaagaaatacttccttcaagatggtaaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGACATCTTTTCAGGTTTATTCA 262 53 13 Antisense
GACATCTTTTCAGGTTTATTCACAC 94 371 16 Antisense
CTTTTCAGGTTTATTCACACAGGTG 708 221 21 Antisense
GAAGAAGACCTGAGAGTTGAACTAC 392 335 58 Antisense
GAACTACAAAATATGAAGCCTGGTG 562 349 76 Antisense
GCCTGGTGAAGGAGTAATTCGTGCT 505 283 93 Antisense
TAATTCGTGCTGAAGTTGGCCCGTC 586 623 107 Antisense
CGTCTGGCGTAGCTACTTTCAAGAA 182 247 128 Antisense
TGGCGTAGCTACTTTCAAGAAATAC 564 539 132 Antisense
ACTTTCAAGAAATACTTCCTTCAAG 338 101 142 Antisense
ATACTTCCTTCAAGATGGTAAACTT 637 21 153 Antisense
Sequence Source Affymetrix Proprietary Database