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[172500_x_at]

Description T12E12.5 /REP_DB=WormBase Gene ID /WP=CE13591 /TR=Q22432 /GB=AAB03122.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.9
(-3)
A 		1.3
(-2.6)
A 		1
(-2.9)
A 		7
(3)
A 		6
B 0.4
(-3)
A 		0.8
(-1.7)
A 		0.7
(-2)
A 		2.2
(3)
A 		2
C 1.1
(-2.7)
A 		12.7
(3)
A 		0.4
(-3)
A 		12.1
(2.7)
A 		12
avr 0.8
(-2.9) 		4.9
(0.9) 		0.7
(-3) 		7.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.9
(-2.6)
A 		0.9
(-3)
A 		15.5
(3)
A 		0.8
(-3)
A 		2.9
(-2.1)
A 		1.3
(-2.8)
A 		15
B 0.8
(0)
A 		1.4
(3)
A 		1.3
(2.5)
A 		0.7
(-0.5)
A 		0.2
(-3)
A 		0.3
(-2.5)
A 		1
C 1.3
(-2.5)
A 		9.4
(3)
A 		1.5
(-2.3)
A 		7.9
(2)
A 		0.5
(-3)
A 		4.2
(-0.5)
A 		9
avr 1.3
(-2.9) 		3.9
(0.3) 		6.1
(3) 		3.1
(-0.7) 		1.2
(-3) 		1.9
(-2.1) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		1
(3)
A 		1
B 0.1
(-3)
A 		0.2
(-1.5)
A 		0.2
(-1.5)
A 		0.5
(3)
A 		0
C 0.4
(-2.5)
A 		3.7
(3)
A 		0.1
(-3)
A 		2
(0.2)
A 		4
avr 0.3
(-2.5) 		1.4
(3) 		0.2
(-3) 		1.2
(2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.4
(-2.6)
A 		0.3
(-2.8)
A 		3.4
(3)
A 		0.2
(-3)
A 		0.9
(-1.7)
A 		0.3
(-2.8)
A 		3
B 0.3
(-0)
A 		0.5
(3)
A 		0.3
(-0)
A 		0.2
(-1.5)
A 		0.1
(-3)
A 		0.1
(-3)
A 		0
C 0.5
(-2.3)
A 		2.9
(3)
A 		0.4
(-2.6)
A 		1.6
(0.1)
A 		0.2
(-3)
A 		1.4
(-0.3)
A 		3
avr 0.4
(-3) 		1.2
(1.8) 		1.4
(3) 		0.7
(-1.2) 		0.4
(-3) 		0.6
(-1.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172500_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10443
Sequence Type Exemplar sequence
Representative Public ID T12E12.5 NCBI
Target Description T12E12.5 /REP_DB=WormBase Gene ID /WP=CE13591 /TR=Q22432 /GB=AAB03122.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T12E12.5
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T12E12.5 T12E12.5 /REP_DB=WormBase Gene ID /WP=CE13591 /TR=Q22432 /GB=AAB03122.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5562230-5562570(-) 80.7 100.0
Sequence
Target Sequence 
>C. ELEGANS:172500_X_AT
gcggaatttagtagtactagcatttaaaaaataccgtacccggtctcgacacgctttcgc
actccttttttcacttttaaaaaattgtcgtgttgagaccaaatatcgtatttttcagat
gcatatccccacagcaaagaaaacaacaaataaaattatttttagaaaatactttttcga
acacttgacaaaattcgtatcaacatattcaattgatgagtattttccaaaacagttcca
aatttcttatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGAATTTAGTAGTACTAGCATTT 464 293 15 Antisense
AAAAATTGTCGTGTTGAGACCAAAT 34 3 94 Antisense
GTCGTGTTGAGACCAAATATCGTAT 421 473 101 Antisense
GAGACCAAATATCGTATTTTTCAGA 518 393 109 Antisense
GTATTTTTCAGATGCATATCCCCAC 608 453 122 Antisense
TTCAGATGCATATCCCCACAGCAAA 162 687 128 Antisense
GCATATCCCCACAGCAAAGAAAACA 319 307 135 Antisense
TACTTTTTCGAACACTTGACAAAAT 674 609 184 Antisense
GACAAAATTCGTATCAACATATTCA 300 365 201 Antisense
GATGAGTATTTTCCAAAACAGTTCC 335 409 229 Antisense
CAAAACAGTTCCAAATTTCTTATGA 369 189 242 Antisense
Sequence Source Affymetrix Proprietary Database