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[172499_x_at]

Description F07G11.2 /REP_DB=WormBase Gene ID /WP=CE09223 /TR=O16233 /GB=AAG24049.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 18      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 2.1
(-3)
A 		15.8
(-1.8)
A 		2.2
(-3)
A 		70.5
(3)
A 		68
B 1.5
(-3)
A 		17.1
(1.4)
A 		1.5
(-3)
A 		22.9
(3)
A 		21
C 2.9
(-2.8)
A 		5.3
(-2.5)
A 		0.8
(-3)
A 		60.5
(3)
P 		60
avr 2.2
(-2.9) 		12.7
(-1.7) 		1.5
(-3) 		51.3
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 17.7
(-2.4)
A 		2.5
(-3)
A 		44.4
(-1.3)
A 		147.1
(3)
P 		101
(1.1)
P 		20.7
(-2.2)
A 		145
B 22.2
(-2.4)
A 		9.9
(-3)
A 		35.2
(-1.8)
A 		133.6
(3)
P 		112.1
(2)
P 		10.5
(-3)
A 		124
C 15
(-2.6)
A 		8.2
(-2.8)
A 		19.2
(-2.4)
A 		185.8
(3)
P 		95
(0)
P 		2.1
(-3)
A 		184
avr 18.3
(-2.5) 		6.9
(-3) 		32.9
(-2) 		155.5
(3) 		102.7
(0.9) 		11.1
(-2.8) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.8
(-2.9)
A 		3.4
(-1.3)
A 		0.6
(-3)
A 		10.3
(3)
A 		10
B 0.5
(-2.7)
A 		4.2
(2.1)
A 		0.3
(-3)
A 		4.9
(3)
A 		5
C 1
(-2.6)
A 		1.5
(-2.3)
A 		0.3
(-3)
A 		10.2
(3)
P 		10
avr 0.8
(-2.7) 		3
(-1.1) 		0.4
(-3) 		8.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 3.3
(-2.6)
A 		0.9
(-3)
A 		9.7
(-1.5)
A 		37.3
(3)
P 		30.5
(1.9)
P 		5
(-2.3)
A 		36
B 7.7
(-2.4)
A 		3.3
(-3)
A 		8.5
(-2.3)
A 		35.4
(1.6)
P 		45.5
(3)
P 		3.9
(-2.9)
A 		42
C 5.6
(-2.2)
A 		2.5
(-2.7)
A 		4.9
(-2.3)
A 		37.4
(3)
P 		30.7
(1.9)
P 		0.7
(-3)
A 		37
avr 5.5
(-2.4) 		2.2
(-3) 		7.7
(-2) 		36.7
(3) 		35.6
(2.8) 		3.2
(-2.8) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172499_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11258
Sequence Type Exemplar sequence
Representative Public ID F07G11.2 NCBI
Target Description F07G11.2 /REP_DB=WormBase Gene ID /WP=CE09223 /TR=O16233 /GB=AAG24049.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072457 NCBI Caenorhabditis elegans F07G11.2 (F07G11.2) mRNA, complete cds. 11/11 None
SNAP00000010038 ENSEMBL cdna:SNAP chromosome:CEL140:V:7307721:7308388:1 10/11 None
GENEFINDER00000010044 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7307296:7314349:1 11/11 None
F07G11.2 ENSEMBL cdna:known chromosome:CEL140:V:7305292:7308388:1 gene:F07G11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072447 5/11 Cross Hyb Matching Probes A 
NM_072458 8/11 Cross Hyb Matching Probes A 
GENEFINDER00000010046 8/11 Cross Hyb Matching Probes None
SNAP00000044270 5/11 Cross Hyb Matching Probes None
GENEFINDER00000044277 5/11 Cross Hyb Matching Probes None
C13A2.10 5/11 Cross Hyb Matching Probes A 
F07G11.7 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7305292-7308389(+) 100.0 100.0
chrV:7276452-7277401(-) 86.12 86.12
Public Domain and Genome References
Gene Title
Ensembl F07G11.2
Entrez Gene 184157 Entrez gene
SwissProt O16233 EMBL-EBI
WormBase CE09223 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504858 F07G11.2 [Caenorhabditis elegans] gb|AAG24049.1| Hypothetical protein F07G11.2 [Caenorhabditis elegans] 1.0E-162
blast AAB69882 Hypothetical protein C13A2.10 [Caenorhabditis elegans] ref|NP_504848.1| C13A2.10 [Caenorhabditis elegans] 1.0E-134
blast NP_504858 F07G11.2 [Caenorhabditis elegans] gb|AAG24049.1| Hypothetical protein F07G11.2 [Caenorhabditis elegans] 1.0E-131
blast AAB69882 Hypothetical protein C13A2.10 [Caenorhabditis elegans] ref|NP_504848.1| C13A2.10 [Caenorhabditis elegans] 1.0E-124
blast NP_504860 F07G11.1 [Caenorhabditis elegans] gb|AAG24050.1| Hypothetical protein F07G11.1 [Caenorhabditis elegans] 1.0E-120
blast NP_504858 F07G11.2 [Caenorhabditis elegans] gb|AAG24049.1| Hypothetical protein F07G11.2 [Caenorhabditis elegans] 1.0E-100
blast AAB69882 Hypothetical protein C13A2.10 [Caenorhabditis elegans] ref|NP_504848.1| C13A2.10 [Caenorhabditis elegans] 2.0E-96
blast AAB69876 Hypothetical protein C13A2.4 [Caenorhabditis elegans] ref|NP_504850.1| C13A2.4 [Caenorhabditis elegans] 3.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.4E-54
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 1.8E-30
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.4E-54
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 3.2E-6
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 7.5E-26
Sequence
Target Sequence 
>C. ELEGANS:172499_X_AT
gaaccgctgacaatggttactcttggaattggacgtgatatccgagcagagctcagactg
aaagcgatgtaccctaacctagcttttcacggagcgggcccgggtgttgctgtgaacaaa
gatctatacgaaagcacgttgggtgggaaattctacaattatgcagttagtggacaaaac
ggtatacatatatccaaaatctttcttgaacgaaactctacagtagatgcaactaaacac
attcgagccgattatttcttcagaaaaatacttaataaaaacagaatagacattctttgg
atagacatcgaacaaaatgaatacggtattcttgagcaaatccatcagaatggaaagttg
gatcaggtcggcgtcaagatatgtcagata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCGCTGACAATGGTTACTCTTG 454 345 265 Antisense
GGTTACTCTTGGAATTGGACGTGAT 502 505 279 Antisense
GGACGTGATATCCGAGCAGAGCTCA 531 523 295 Antisense
GAAAGCGATGTACCCTAACCTAGCT 432 359 324 Antisense
TAACCTAGCTTTTCACGGAGCGGGC 670 629 339 Antisense
GCCCGGGTGTTGCTGTGAACAAAGA 48 287 362 Antisense
GCAACTAAACACATTCGAGCCGATT 656 319 493 Antisense
CATTCGAGCCGATTATTTCTTCAGA 187 217 504 Antisense
ACGGTATTCTTGAGCAAATCCATCA 426 95 587 Antisense
GGAAAGTTGGATCAGGTCGGCGTCA 400 527 616 Antisense
GGTCGGCGTCAAGATATGTCAGATA 406 503 630 Antisense
Sequence Source Affymetrix Proprietary Database