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[172498_x_at]

Description Y49E10.26 /REP_DB=WormBase Gene ID /WP=CE24391 /TR=Q9U278 /GB=CAB54464.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 25.6
(-2)
A 		21.6
(-2.7)
A 		19.5
(-3)
A 		57.7
(3)
A 		38
B 23.4
(-2.1)
A 		21.2
(-2.3)
A 		15.5
(-3)
A 		66.6
(3)
A 		51
C 46.5
(1)
A 		20
(-2.6)
A 		17
(-3)
A 		61.4
(3)
A 		44
avr 31.8
(-1) 		20.9
(-2.5) 		17.3
(-3) 		61.9
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 54.9
(2.6)
A 		1.3
(-3)
A 		16.2
(-1.4)
A 		58.8
(3)
P 		14.2
(-1.7)
A 		19.9
(-1.1)
A 		58
B 73
(3)
A 		25.8
(-1)
A 		23.9
(-1.1)
A 		1.8
(-3)
A 		16.6
(-1.8)
A 		26.5
(-0.9)
P 		71
C 41.9
(2.1)
A 		8.7
(-3)
A 		26.9
(-0.2)
A 		16.4
(-1.8)
A 		20
(-1.3)
A 		47.5
(3)
A 		39
avr 56.6
(3) 		11.9
(-3) 		22.3
(-1.6) 		25.7
(-1.1) 		16.9
(-2.3) 		31.3
(-0.4) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.3
(3)
A 		4.7
(-3)
A 		5.1
(-2.5)
A 		8.4
(1.8)
A 		5
B 7.5
(-0.8)
A 		5.2
(-2.1)
A 		3.6
(-3)
A 		14.2
(3)
A 		11
C 15.4
(3)
A 		5.7
(-3)
A 		5.9
(-2.9)
A 		10.3
(-0.2)
A 		10
avr 10.7
(2.7) 		5.2
(-2.7) 		4.9
(-3) 		11
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 10.1
(1)
A 		0.5
(-3)
A 		3.5
(-1.8)
A 		14.9
(3)
P 		4.3
(-1.4)
A 		4.9
(-1.2)
A 		14
B 25.4
(3)
A 		8.6
(-1)
A 		5.8
(-1.7)
A 		0.5
(-3)
A 		6.8
(-1.5)
A 		9.9
(-0.7)
P 		25
C 15.5
(2.8)
A 		2.7
(-3)
A 		6.8
(-1.1)
A 		3.3
(-2.7)
A 		6.5
(-1.3)
A 		15.9
(3)
A 		13
avr 17
(3) 		3.9
(-3) 		5.4
(-2.3) 		6.2
(-1.9) 		5.9
(-2.1) 		10.2
(-0.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172498_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6816
Sequence Type Exemplar sequence
Representative Public ID Y49E10.26 NCBI
Target Description Y49E10.26 /REP_DB=WormBase Gene ID /WP=CE24391 /TR=Q9U278 /GB=CAB54464.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y49E10.26 ENSEMBL cdna:pseudogene chromosome:CEL140:III:12388157:12388860:1 gene:Y49E10.26 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027289 1/11 Cross Hyb Matching Probes None
NM_071083 2/11 Cross Hyb Matching Probes A 
NM_001029781 1/11 Cross Hyb Matching Probes None
SNAP00000035533 1/11 Cross Hyb Matching Probes None
SNAP00000035534 1/11 Cross Hyb Matching Probes None
SNAP00000041246 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041249 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016111 8/11 Cross Hyb Matching Probes None
SNAP00000016075 6/11 Cross Hyb Matching Probes None
SNAP00000038919 2/11 Cross Hyb Matching Probes None
GENEFINDER00000038932 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015572 1/11 Cross Hyb Matching Probes None
SNAP00000015564 1/11 Cross Hyb Matching Probes None
Y46H3C.5 2/11 Cross Hyb Matching Probes A 
Y13C8A.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12388152-12388856(+) 82.04 100.0
Public Domain and Genome References
Ensembl Y49E10.26
Sequence
Target Sequence 
>C. ELEGANS:172498_X_AT
acgacaaggtcaacaaaggatcagaatggtgaggaaagatttaaattatgcttcagcgaa
actgattttttacagatcgacgatcaagtcgacgaaggaggatcgtgccggaaggatcgg
gatgagacgacgttggaaaaagggagtccgaaaacacgggaaatgatctacgatgaaaac
aggatcagggcagaaggatcaggcccgaaggatcgggacgagaggacgatggaaagaggg
agaccggaaacacggaaaatgatctacgatagagacgacgaagaaggatcgggccggaag
gatcaggccggaaggatcgtgacgagacgacaatgttcagagggagtccggaaactcgga
aaatgcgacgacgacgaacaggatggattgatcggaatggatcggaatggatcggaatgg
ttggatcgggagaaggcgagaaccacggcaacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACAAGGTCAACAAAGGATCAGA 710 71 19 Antisense
AGATTTAAATTATGCTTCAGCGAAA 158 65 55 Antisense
GGAGGATCGTGCCGGAAGGATCGGG 256 515 115 Antisense
GGATCGGGATGAGACGACGTTGGAA 428 511 132 Antisense
GGCAGAAGGATCAGGCCCGAAGGAT 671 527 207 Antisense
GATCGGGCCGGAAGGATCAGGCCGG 397 377 305 Antisense
CAGGCCGGAAGGATCGTGACGAGAC 188 209 322 Antisense
GTGACGAGACGACAATGTTCAGAGG 642 481 337 Antisense
CGACAATGTTCAGAGGGAGTCCGGA 9 251 346 Antisense
ACTCGGAAAATGCGACGACGACGAA 517 1 372 Antisense
AGAAGGCGAGAACCACGGCAACGAC 9 75 449 Antisense
Sequence Source Affymetrix Proprietary Database