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[172497_x_at]

Description R12E2.15 /REP_DB=WormBase Gene ID /WP=CE18147 /TR=O61781 /GB=AAC17036.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 43      6grp_highest_nonorm > 32      6grp_total > 10      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4246
1 2 3 4 range
A 6.4
(-3)
A 		3178.8
(3)
P 		2989.2
(2.6)
P 		74.2
(-2.9)
A 		3172
B 2.9
(-3)
A 		3721.4
(2.3)
P 		4249.1
(3)
P 		40.4
(-2.9)
A 		4246
C 49.3
(-3)
A 		3690.7
(3)
P 		3251.5
(2.3)
P 		94.4
(-2.9)
A 		3641
avr 19.5
(-3) 		3530.3
(3) 		3496.6
(2.9) 		69.7
(-2.9) 		3511

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1386
1 2 3 4 5 6 range
A 514.1
(-3)
P 		1621.6
(2.4)
P 		1747.9
(3)
P 		729.1
(-2)
P 		899.1
(-1.1)
P 		976
(-0.8)
P 		1234
B 810.5
(-3)
P 		1900
(3)
P 		1869.6
(2.8)
P 		869.8
(-2.7)
P 		822.1
(-2.9)
P 		1204.2
(-0.8)
P 		1090
C 670.3
(-3)
P 		1470.8
(3)
P 		1090.9
(0.2)
P 		857.8
(-1.6)
P 		1182.6
(0.8)
P 		1205.2
(1)
P 		801
avr 665
(-3) 		1664.1
(3) 		1569.5
(2.4) 		818.9
(-2.1) 		967.9
(-1.2) 		1128.5
(-0.2) 		999
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1132
1 2 3 4 range
A 2.3
(-3)
A 		690
(2.3)
P 		781.4
(3)
P 		10.9
(-2.9)
A 		779
B 0.9
(-3)
A 		919.1
(2.6)
P 		984.6
(3)
P 		8.6
(-3)
A 		984
C 16.3
(-3)
A 		1061.1
(2.6)
P 		1133.3
(3)
P 		15.9
(-3)
A 		1117
avr 6.5
(-3) 		890.1
(2.5) 		966.4
(3) 		11.8
(-3) 		960

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 94.8
(-3)
P 		576.7
(3)
P 		380.7
(0.6)
P 		184.9
(-1.9)
P 		271.3
(-0.8)
P 		237.6
(-1.2)
P 		482
B 282
(-2.2)
P 		632.4
(3)
P 		454
(0.3)
P 		230.4
(-3)
P 		334
(-1.5)
P 		449
(0.3)
P 		402
C 248.5
(-1.3)
P 		448.8
(3)
P 		277.7
(-0.7)
P 		172.5
(-3)
P 		382.7
(1.6)
P 		403.4
(2)
P 		276
avr 208.4
(-2.8) 		552.6
(3) 		370.8
(-0.1) 		195.9
(-3) 		329.3
(-0.8) 		363.3
(-0.2) 		357
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172497_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2410
Sequence Type Exemplar sequence
Representative Public ID R12E2.15 NCBI
Target Description R12E2.15 /REP_DB=WormBase Gene ID /WP=CE18147 /TR=O61781 /GB=AAC17036.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058907(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058907 NCBI Caenorhabditis elegans R12E2.15 (R12E2.15) mRNA, complete cds. 11/11 None
SNAP00000012673 ENSEMBL cdna:SNAP chromosome:CEL140:I:4148942:4149412:-1 11/11 None
GENEFINDER00000012698 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4148942:4149412:-1 11/11 None
R12E2.15 ENSEMBL cdna:known chromosome:CEL140:I:4148942:4149412:-1 gene:R12E2.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058908 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000012699 1/11 Cross Hyb Matching Probes None
SNAP00000012674 2/11 Cross Hyb Matching Probes None
R12E2.14 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4150000-4150563(+) 92.44 92.44
chrI:4148941-4149412(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R12E2.15
Entrez Gene 172000 Entrez gene
SwissProt O61781 EMBL-EBI
WormBase CE18147 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172497_X_AT
ctctggtaacgcttgcatcggaggaggagcaggaggcgccggtggatgctgcccaccagc
tcagccaggatgtggaaatccatgccaaggagccggaccacaatacgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTGGTAACGCTTGCATCGGAGGA 624 225 57 Antisense
CTGGTAACGCTTGCATCGGAGGAGG 653 239 59 Antisense
GGTAACGCTTGCATCGGAGGAGGAG 172 499 61 Antisense
AACGCTTGCATCGGAGGAGGAGCAG 621 145 64 Antisense
CGCTTGCATCGGAGGAGGAGCAGGA 345 255 66 Antisense
CGGAGGAGGAGCAGGAGGCGCCGGT 63 243 75 Antisense
CCCACCAGCTCAGCCAGGATGTGGA 567 257 108 Antisense
ACCAGCTCAGCCAGGATGTGGAAAT 644 85 111 Antisense
GCCAGGATGTGGAAATCCATGCCAA 259 281 120 Antisense
GAAATCCATGCCAAGGAGCCGGACC 387 361 131 Antisense
CAAGGAGCCGGACCACAATACGCTG 477 183 142 Antisense
Sequence Source Affymetrix Proprietary Database