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[172496_x_at]

Description M01A10.4 /REP_DB=WormBase Gene ID /WP=CE12234 /TR=P91391 /GB=AAB42276.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 3.2
(-3)
A 		3.4
(-2.9)
A 		26.7
(3)
A 		16.6
(0.4)
A 		24
B 20.1
(0)
A 		5.4
(-2.7)
A 		3.8
(-3)
A 		36.2
(3)
P 		32
C 8.2
(-2.4)
A 		2.4
(-3)
A 		3.2
(-2.9)
A 		58.6
(3)
P 		56
avr 10.5
(-1.8) 		3.7
(-3) 		11.2
(-1.7) 		37.1
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 10.4
(-1.7)
A 		3.2
(-3)
A 		30.4
(1.8)
A 		5.1
(-2.7)
A 		37.2
(3)
A 		3.8
(-2.9)
A 		34
B 9.3
(-1.5)
A 		28.4
(2.1)
A 		10.9
(-1.2)
A 		32.9
(3)
A 		4.3
(-2.5)
A 		1.5
(-3)
A 		31
C 16.7
(-1.2)
A 		16.1
(-1.3)
A 		32.9
(3)
A 		9.6
(-3)
A 		15.3
(-1.5)
A 		14.5
(-1.7)
A 		23
avr 12.1
(-1.2) 		15.9
(0.1) 		24.7
(3) 		15.9
(0.1) 		18.9
(1.1) 		6.6
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.2
(-2.5)
A 		0.7
(-3)
A 		7
(3)
A 		2.4
(-1.4)
A 		6
B 6.4
(1.9)
A 		1.3
(-2.6)
A 		0.9
(-3)
A 		7.7
(3)
P 		7
C 2.7
(-1.7)
A 		0.7
(-3)
A 		1.1
(-2.7)
A 		9.9
(3)
P 		9
avr 3.4
(-0.4) 		0.9
(-3) 		3
(-0.8) 		6.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.9
(-2.4)
A 		1.1
(-2.9)
A 		6.6
(0.3)
A 		1.3
(-2.8)
A 		11.2
(3)
A 		0.9
(-3)
A 		10
B 3.2
(-1.2)
A 		9.4
(3)
A 		2.6
(-1.6)
A 		8.7
(2.5)
A 		1.8
(-2.2)
A 		0.6
(-3)
A 		9
C 6.2
(1)
A 		4.9
(-0.2)
A 		8.4
(3)
A 		1.9
(-3)
A 		4.9
(-0.2)
A 		4.8
(-0.3)
A 		7
avr 3.8
(-0.4) 		5.1
(1.6) 		5.9
(2.8) 		4
(-0.1) 		6
(3) 		2.1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172496_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.851
Sequence Type Exemplar sequence
Representative Public ID M01A10.4 NCBI
Target Description M01A10.4 /REP_DB=WormBase Gene ID /WP=CE12234 /TR=P91391 /GB=AAB42276.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059224 NCBI Caenorhabditis elegans M01A10.4 (M01A10.4) mRNA, complete cds. 11/11 None
M01A10.4 ENSEMBL cdna:known chromosome:CEL140:I:5555294:5557612:-1 gene:M01A10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075796 5/11 Cross Hyb Matching Probes A 
NM_062282 5/11 Cross Hyb Matching Probes A 
SNAP00000009743 4/11 Cross Hyb Matching Probes None
SNAP00000027217 5/11 Cross Hyb Matching Probes None
C49D10.1 5/11 Cross Hyb Matching Probes A 
F22B8.8 2/11 Cross Hyb Matching Probes None
F55A4.6 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5555293-5557612(-) 10.78 100.0
Public Domain and Genome References
Ensembl M01A10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42276 Hypothetical protein M01A10.4 [Caenorhabditis elegans] ref|NP_491625.1| M01A10.4 [Caenorhabditis elegans] 0.0
blast AAC71186 Hypothetical protein C49D10.1 [Caenorhabditis elegans] ref|NP_494683.1| C49D10.1 [Caenorhabditis elegans] 0.0
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 9.8E-9
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.5E-27
Sequence
Target Sequence 
>C. ELEGANS:172496_X_AT
ttatctcaatctcaaatgccgctttacttaaatgccgtcagctgcttcgatcattccaga
cttccaatgctcaattctatttcaaactgtacaacacctatgtcagaccaatcctggaat
atggttgcgagatttttcacccgtccactattgccttttcagataaactagagtccccac
ttcgcttcttttcacgtaaagtgtttcaaagatgtaatctgaaattctcatcctattatg
atagactttcccaatttgaattgaaaagcaccctccacagaagactccttatgattctta
aaaccttctataacattgtcacaaagtcatatcattttccatcattattcctctatgtta
aatgttctcgttccaaaagatttccatatatgttgtgttcaactggtataccaaataacg
ggtttctacatgctaacttgtcattatggaaccacgtagctagactgttgcctgaaataa
tgagtccatcggcttttgctgcgcgtattaatttcatccccgtgacttatcttatcccat
ccaccattgactgttgccggtcaagatttggtcactttatctttttatctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCTCAATCTCAAATGCCGCTTT 606 679 1280 Antisense
GCCGCTTTACTTAAATGCCGTCAGC 418 285 1297 Antisense
TCAGCTGCTTCGATCATTCCAGACT 389 623 1317 Antisense
ATTCCAGACTTCCAATGCTCAATTC 549 7 1332 Antisense
ATGGTTGCGAGATTTTTCACCCGTC 99 51 1400 Antisense
TGAATTGAAAAGCACCCTCCACAGA 277 575 1536 Antisense
TCATTTTCCATCATTATTCCTCTAT 669 619 1611 Antisense
GAACCACGTAGCTAGACTGTTGCCT 582 345 1728 Antisense
TAATGAGTCCATCGGCTTTTGCTGC 638 635 1757 Antisense
GCTGCGCGTATTAATTTCATCCCCG 212 187 1777 Antisense
TGGTCACTTTATCTTTTTATCTCAA 664 551 1848 Antisense
Sequence Source Affymetrix Proprietary Database