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[172495_x_at]

Description T06C10.5 /REP_DB=WormBase Gene ID /WP=CE04903 /TR=Q22244 /GB=AAA82301.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 03      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 334
1 2 3 4 range
A 70.4
(-3)
A 		70
(-3)
A 		79
(-2.7)
A 		246
(3)
P 		176
B 106.3
(3)
A 		75.6
(-1)
A 		60
(-3)
A 		75.3
(-1)
A 		46
C 80.9
(-2.4)
A 		73.7
(-2.5)
A 		48
(-3)
A 		381.5
(3)
P 		334
avr 85.9
(-2.2) 		73.1
(-2.6) 		62.3
(-3) 		234.3
(3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 69
(3)
A 		55.1
(1.6)
A 		69.3
(3)
A 		48.5
(0.9)
A 		10
(-3)
A 		40.8
(0.1)
A 		59
B 70.6
(3)
A 		44.8
(0.2)
A 		52.7
(1.1)
A 		46.1
(0.3)
A 		26.4
(-1.8)
A 		15.5
(-3)
A 		55
C 69.4
(1)
A 		101.7
(3)
A 		48.9
(-0.2)
A 		24.3
(-1.8)
A 		11.8
(-2.5)
A 		4.1
(-3)
A 		98
avr 69.7
(3) 		67.2
(2.7) 		57
(1.6) 		39.6
(-0.4) 		16.1
(-3) 		20.1
(-2.6) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 25.6
(0)
A 		15.2
(-3)
A 		20.6
(-1.4)
A 		36
(3)
P 		21
B 33.9
(3)
A 		18.7
(-1.6)
A 		13.9
(-3)
A 		16.1
(-2.3)
A 		20
C 26.8
(-1.7)
A 		21.2
(-2.4)
A 		16.7
(-3)
A 		64.3
(3)
P 		48
avr 28.8
(0.2) 		18.4
(-2.6) 		17.1
(-3) 		38.8
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 12.7
(0.5)
A 		19.6
(3)
A 		15.1
(1.4)
A 		12.3
(0.4)
A 		3
(-3)
A 		9.9
(-0.5)
A 		17
B 24.6
(3)
A 		14.9
(-0.1)
A 		12.8
(-0.8)
A 		12.2
(-1)
A 		10.7
(-1.4)
A 		5.8
(-3)
A 		19
C 25.7
(1.9)
A 		31
(3)
A 		12.4
(-0.8)
A 		4.9
(-2.3)
A 		3.8
(-2.5)
A 		1.4
(-3)
A 		30
avr 21
(2.7) 		21.8
(3) 		13.4
(-0.1) 		9.8
(-1.5) 		5.8
(-3) 		5.7
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172495_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9809
Sequence Type Exemplar sequence
Representative Public ID T06C10.5 NCBI
Target Description T06C10.5 /REP_DB=WormBase Gene ID /WP=CE04903 /TR=Q22244 /GB=AAA82301.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000043497 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7874370:7875209:-1 11/11 None
GENEFINDER00000043506 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7874370:7875209:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078379 5/11 Cross Hyb Matching Probes A 
NM_077119 5/11 Cross Hyb Matching Probes A 
NM_064793 8/11 Cross Hyb Matching Probes A 
NM_071125 4/11 Cross Hyb Matching Probes None
NM_066128 7/11 Cross Hyb Matching Probes A 
NM_075970 5/11 Cross Hyb Matching Probes A 
NM_078455 7/11 Cross Hyb Matching Probes A 
NM_058672 7/11 Cross Hyb Matching Probes A 
NM_061681 5/11 Cross Hyb Matching Probes A 
NM_059054 8/11 Cross Hyb Matching Probes A 
GENEFINDER00000005898 7/11 Cross Hyb Matching Probes None
GENEFINDER00000043553 4/11 Cross Hyb Matching Probes None
SNAP00000043540 8/11 Cross Hyb Matching Probes None
SNAP00000039702 8/11 Cross Hyb Matching Probes None
GENEFINDER00000039704 8/11 Cross Hyb Matching Probes None
SNAP00000012049 5/11 Cross Hyb Matching Probes None
GENEFINDER00000012051 5/11 Cross Hyb Matching Probes None
SNAP00000043894 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043904 4/11 Cross Hyb Matching Probes None
SNAP00000008916 1/11 Cross Hyb Matching Probes None
SNAP00000030989 7/11 Cross Hyb Matching Probes None
GENEFINDER00000030995 4/11 Cross Hyb Matching Probes None
SNAP00000031879 8/11 Cross Hyb Matching Probes None
GENEFINDER00000031882 8/11 Cross Hyb Matching Probes None
SNAP00000000198 5/11 Cross Hyb Matching Probes None
GENEFINDER00000000200 4/11 Cross Hyb Matching Probes None
SNAP00000006732 8/11 Cross Hyb Matching Probes None
GENEFINDER00000006742 8/11 Cross Hyb Matching Probes None
SNAP00000028592 7/11 Cross Hyb Matching Probes None
GENEFINDER00000028599 7/11 Cross Hyb Matching Probes None
SNAP00000033705 6/11 Cross Hyb Matching Probes None
GENEFINDER00000033772 4/11 Cross Hyb Matching Probes None
SNAP00000037693 3/11 Cross Hyb Matching Probes None
GENEFINDER00000037709 3/11 Cross Hyb Matching Probes None
SNAP00000039289 6/11 Cross Hyb Matching Probes None
GENEFINDER00000039297 6/11 Cross Hyb Matching Probes None
SNAP00000001526 6/11 Cross Hyb Matching Probes None
GENEFINDER00000001539 6/11 Cross Hyb Matching Probes None
SNAP00000003414 3/11 Cross Hyb Matching Probes None
GENEFINDER00000003424 3/11 Cross Hyb Matching Probes None
SNAP00000028144 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028157 4/11 Cross Hyb Matching Probes None
SNAP00000032429 5/11 Cross Hyb Matching Probes None
GENEFINDER00000032435 5/11 Cross Hyb Matching Probes None
SNAP00000012632 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034063 2/11 Cross Hyb Matching Probes None
SNAP00000034055 5/11 Cross Hyb Matching Probes None
SNAP00000007929 7/11 Cross Hyb Matching Probes None
GENEFINDER00000007942 4/11 Cross Hyb Matching Probes None
GENEFINDER00000009534 8/11 Cross Hyb Matching Probes None
SNAP00000009529 8/11 Cross Hyb Matching Probes None
SNAP00000043287 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043303 5/11 Cross Hyb Matching Probes None
SNAP00000003534 5/11 Cross Hyb Matching Probes None
GENEFINDER00000003544 5/11 Cross Hyb Matching Probes None
SNAP00000035247 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035253 5/11 Cross Hyb Matching Probes None
SNAP00000022302 8/11 Cross Hyb Matching Probes None
GENEFINDER00000022354 7/11 Cross Hyb Matching Probes None
SNAP00000022319 3/11 Cross Hyb Matching Probes None
Y71F9AL.3 7/11 Cross Hyb Matching Probes A 
F54D7.1 8/11 Cross Hyb Matching Probes A 
C08F1.9 5/11 Cross Hyb Matching Probes A 
Y53C12A.5 4/11 Cross Hyb Matching Probes None
K10F12.5 8/11 Cross Hyb Matching Probes A 
C06E8.4 7/11 Cross Hyb Matching Probes A 
Y105C5A.7 6/11 Cross Hyb Matching Probes None
Y32G9A.9 4/11 Cross Hyb Matching Probes None
F44G3.3 3/11 Cross Hyb Matching Probes A 
Y102A11A.4 5/11 Cross Hyb Matching Probes A 
C24A3.7 5/11 Cross Hyb Matching Probes A 
B0302.3 5/11 Cross Hyb Matching Probes A 
C33E10.4 5/11 Cross Hyb Matching Probes None
F20B4.7 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16816 hypothetical protein T06C10.5 - Caenorhabditis elegans 1.0E-161
blast AAA82369 Hypothetical protein B0302.3 [Caenorhabditis elegans] ref|NP_510780.1| B0302.3 [Caenorhabditis elegans] 1.0E-158
blast H88671 protein F28E10.3 [imported] - Caenorhabditis elegans 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.8E-12
Sequence
Target Sequence 
>C. ELEGANS:172495_X_AT
cgacgtcgacgagtacatctacctcggtcgtcaaatcaacgcccaaaacaacttgatgcc
ggaaatccacagaagacgtagagcagcctgggctgcattcaatggaatcaagaacaccac
cgactccatcaccgacaagaagattcgtgcgactctgttcgactcaattgtccttccagc
gctcacctacggttcagaagcctggacattcaccaaagctctatccgaacgagtacgaat
cacacatgcctccctagaaagacggcttgttgggataacactcacccaacaacgagagcg
agatctccatcgagaagacattcgtacgatgtctctagtcagggatccgctcaatttcgt
gaaaaagaggaagctaggatgggctggacacgttgcgagaaggaaagacggaagatggac
cacgttgatgacagaatggcgcccatatggatggaaaaggcctgttggaaggccgccgat
gcgatgggctgattcgctgcgaaaggagatcaccactcgtgacgcagacggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACGTCGACGAGTACATCTACCTC 455 251 237 Antisense
CTACCTCGGTCGTCAAATCAACGCC 532 225 255 Antisense
GAAGATTCGTGCGACTCTGTTCGAC 1 339 375 Antisense
GACTCTGTTCGACTCAATTGTCCTT 13 375 387 Antisense
GCTCACCTACGGTTCAGAAGCCTGG 204 301 417 Antisense
GAAGCCTGGACATTCACCAAAGCTC 246 345 433 Antisense
ATTCGTACGATGTCTCTAGTCAGGG 125 3 556 Antisense
TAGTCAGGGATCCGCTCAATTTCGT 601 653 572 Antisense
GCTAGGATGGGCTGGACACGTTGCG 450 299 609 Antisense
GATGCGATGGGCTGATTCGCTGCGA 194 415 714 Antisense
TCACCACTCGTGACGCAGACGGAGA 144 625 746 Antisense
Sequence Source Affymetrix Proprietary Database