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[172493_x_at]

Description Y17G7B.2B /REP_DB=WormBase Gene ID /WP=CE20199 /TR=Q9XXH4 /GB=CAA19468.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      6grp_highest_nonorm > 72      6grp_total > 37      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 455.8
(3)
P 		352.7
(-3)
A 		376.5
(-1.6)
M 		362.8
(-2.4)
P 		103
B 474.6
(3)
P 		264.9
(-3)
A 		298
(-2.1)
A 		308.2
(-1.8)
P 		210
C 417.7
(3)
P 		275.2
(-3)
A 		333.8
(-0.5)
P 		372.8
(1.1)
P 		143
avr 449.4
(3) 		297.6
(-3) 		336.1
(-1.5) 		347.9
(-1) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 457.9
(3)
P 		433.8
(2.1)
P 		306.3
(-2.4)
P 		289.4
(-3)
P 		329.4
(-1.6)
P 		455
(2.9)
P 		169
B 393.4
(-2.6)
P 		462.6
(2)
P 		387.3
(-3)
P 		390.1
(-2.8)
P 		402.9
(-2)
P 		478.2
(3)
P 		91
C 596.2
(3)
P 		498.4
(1.2)
P 		345.8
(-1.7)
P 		344.3
(-1.7)
P 		277.3
(-3)
P 		461.3
(0.5)
P 		319
avr 482.5
(3) 		464.9
(2.3) 		346.5
(-2.6) 		341.3
(-2.8) 		336.5
(-3) 		464.8
(2.3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 166
(3)
P 		76.6
(-1.8)
A 		98.4
(-0.6)
M 		53.1
(-3)
P 		113
B 151.3
(3)
P 		65.4
(-3)
A 		69.1
(-2.7)
A 		65.7
(-3)
P 		86
C 138.3
(3)
P 		79.1
(-1.7)
A 		116.3
(1.2)
P 		62.9
(-3)
P 		75
avr 151.9
(3) 		73.7
(-2.1) 		94.6
(-0.8) 		60.6
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 84.4
(-1.8)
P 		154.3
(3)
P 		66.7
(-3)
P 		73.4
(-2.5)
P 		99.4
(-0.8)
P 		110.8
(0)
P 		88
B 136.9
(0.1)
P 		154
(1.3)
P 		94
(-3)
P 		103.3
(-2.3)
P 		163.7
(2)
P 		178.3
(3)
P 		84
C 221
(3)
P 		152.1
(0.3)
P 		88
(-2.3)
P 		69.2
(-3)
P 		89.7
(-2.2)
P 		154.4
(0.4)
P 		152
avr 147.4
(2.5) 		153.5
(3) 		82.9
(-2.9) 		82
(-3) 		117.6
(-0) 		147.8
(2.5) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172493_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3340
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.2B NCBI
Target Description Y17G7B.2B /REP_DB=WormBase Gene ID /WP=CE20199 /TR=Q9XXH4 /GB=CAA19468.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064152(11), NM_064153(9), NM_064154(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064152 NCBI Caenorhabditis elegans Y17G7B.2b (Y17G7B.2) mRNA, complete cds. 11/11 A 
NM_064153 NCBI Caenorhabditis elegans Y17G7B.2c (Y17G7B.2) mRNA, complete cds. 9/11 A 
NM_064154 NCBI Caenorhabditis elegans Y17G7B.2a (Y17G7B.2) mRNA, complete cds. 11/11 A 
SNAP00000030317 ENSEMBL cdna:SNAP chromosome:CEL140:II:11980378:12001314:1 11/11 None
GENEFINDER00000030400 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11980378:11988602:1 10/11 None
Y17G7B.2b ENSEMBL cdna:known chromosome:CEL140:II:11980329:11988764:1 gene:Y17G7B.2 11/11 A 
Y17G7B.2a ENSEMBL cdna:known chromosome:CEL140:II:11980378:11988353:1 gene:Y17G7B.2 11/11 A 
Y17G7B.2c ENSEMBL cdna:known chromosome:CEL140:II:11980378:11988353:1 gene:Y17G7B.2 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11980374-11988350(+) 99.42 100.0
Public Domain and Genome References
Ensembl Y17G7B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19468 Hypothetical protein Y17G7B.2b [Caenorhabditis elegans] ref|NP_496553.1| Y17G7B.2b [Caenorhabditis elegans] 0.0
blast CAA19449 Hypothetical protein Y17G7B.2a [Caenorhabditis elegans] ref|NP_496555.1| Y17G7B.2a [Caenorhabditis elegans] 0.0
blast CAE73557 Hypothetical protein CBG21026 [Caenorhabditis briggsae] 0.0
blast CAA19469 Hypothetical protein Y17G7B.2c [Caenorhabditis elegans] ref|NP_496554.1| Y17G7B.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 2.8E-15
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.6E-11
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.6E-11
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 2.8E-15
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.6E-11
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 4.6E-28
Pfam IPR002773 EMBL-EBI Deoxyhypusine synthase 1.0E-126
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 3.3E-7
Sequence
Target Sequence 
>C. ELEGANS:172493_X_AT
tgcatccctgcaagcatgtgttggatacaacaaattctcatatggatggcgatcgaaaca
cggaacgaaatttcatgaggcaaaaggaaaaaagtatcattttggaggttttaagcaagg
cgacgttctcggctgtctaatccatcttccagtggacaaaaaactgcagattccggcaaa
tttgccatcggaaaagtatcttccagtatcacacaaaggcttcaatttgatatcatttaa
agcgaattatttctttgaagtccaagaggagtccgcagatattgcaaagactctggtgga
aatgcctggaagctatatcgagttcttccacaatggaaaatcgtgcggaaaagcatatga
gaatatctacgccggcgcctattacccgtcgatttccatatttaaatctgccacagccac
catgaatctcggccctaaattccgtaatctgccacgtggtgccaccggaatccacgcgag
agccgacgagcagcaacacgaacaaactctttcggatatgctgtatttggtgtcaaaaga
agtgaatttggaccatccgccgcgtgtaaaacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATCCCTGCAAGCATGTGTTGGA 362 579 1104 Antisense
TTAAGCAAGGCGACGTTCTCGGCTG 673 683 1214 Antisense
CTGTCTAATCCATCTTCCAGTGGAC 588 237 1236 Antisense
AAAGTATCTTCCAGTATCACACAAA 130 123 1296 Antisense
GCTATATCGAGTTCTTCCACAATGG 495 303 1415 Antisense
TATTACCCGTCGATTTCCATATTTA 195 663 1483 Antisense
TTAAATCTGCCACAGCCACCATGAA 65 685 1505 Antisense
ATGAATCTCGGCCCTAAATTCCGTA 537 43 1525 Antisense
AAATTCCGTAATCTGCCACGTGGTG 361 113 1540 Antisense
AGCCGACGAGCAGCAACACGAACAA 640 83 1584 Antisense
GACCATCCGCCGCGTGTAAAACGAG 81 317 1654 Antisense
Sequence Source Affymetrix Proprietary Database