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[172492_at]

Description C46H11.1 /REP_DB=WormBase Gene ID /WP=CE08783 /TR=Q9GYI9 /GB=AAF99880.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 28      6grp_total > 13      4grp_total > 25      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 32.1
(-3)
A 		128.6
(2.2)
P 		111.9
(1.3)
A 		144.2
(3)
P 		112
B 94.7
(-1.9)
P 		87.5
(-3)
A 		127.4
(3)
A 		88.4
(-2.9)
P 		40
C 84.1
(1.4)
P 		57.9
(-1.2)
A 		39.7
(-3)
P 		100.9
(3)
P 		61
avr 70.3
(-3) 		91.3
(0.1) 		93
(0.3) 		111.2
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 69.4
(-0.3)
A 		112.1
(3)
P 		81.7
(0.7)
P 		42.3
(-2.3)
A 		33.3
(-3)
A 		48.6
(-1.8)
A 		79
B 98.6
(3)
M 		70.7
(0.4)
A 		81.6
(1.4)
M 		35.4
(-3)
A 		46.3
(-2)
P 		44.5
(-2.1)
A 		63
C 95.6
(0.8)
P 		95
(0.7)
P 		25.3
(-3)
A 		137.2
(3)
A 		78.8
(-0.1)
M 		59.6
(-1.2)
P 		112
avr 87.9
(2.3) 		92.6
(3) 		62.9
(-1.3) 		71.6
(-0) 		52.8
(-2.7) 		50.9
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 11.7
(-3)
A 		27.9
(2.5)
P 		29.3
(3)
A 		21.1
(0.2)
P 		18
B 30.2
(3)
P 		21.6
(-1.5)
A 		29.5
(2.6)
A 		18.8
(-3)
P 		11
C 27.8
(3)
P 		16.6
(-1.8)
A 		13.8
(-3)
P 		17
(-1.6)
P 		14
avr 23.2
(1.8) 		22
(0.5) 		24.2
(3) 		19
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 12.8
(-2.5)
A 		39.9
(3)
P 		17.8
(-1.4)
P 		10.7
(-2.9)
A 		10.1
(-3)
A 		11.8
(-2.7)
A 		30
B 34.3
(3)
M 		23.5
(0.4)
A 		19.8
(-0.5)
M 		9.4
(-3)
A 		18.8
(-0.7)
P 		16.6
(-1.3)
A 		25
C 35.4
(3)
P 		29
(1.7)
P 		6.5
(-3)
A 		27.6
(1.4)
A 		25.5
(0.9)
M 		20
(-0.2)
P 		29
avr 27.5
(1.8) 		30.8
(3) 		14.7
(-3) 		15.9
(-2.6) 		18.1
(-1.7) 		16.1
(-2.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172492_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2374
Sequence Type Exemplar sequence
Representative Public ID C46H11.1 NCBI
Target Description C46H11.1 /REP_DB=WormBase Gene ID /WP=CE08783 /TR=Q9GYI9 /GB=AAF99880.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059111(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059111 NCBI Caenorhabditis elegans C46H11.1 (C46H11.1) mRNA, complete cds. 11/11 None
C46H11.1 ENSEMBL cdna:known chromosome:CEL140:I:5055689:5056042:1 gene:C46H11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5055688-5056042(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46H11.1
Entrez Gene 183521 Entrez gene
SwissProt Q9GYI9 EMBL-EBI
WormBase CE08783 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99880 Hypothetical protein C46H11.1 [Caenorhabditis elegans] ref|NP_491512.1| C46H11.1 [Caenorhabditis elegans] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:172492_AT
gattcatgaggtggcaggggacggaacaaaaagaagctttcatgaaaaaaaaaagatgga
tgaatcatatcagagaaatggaagaacaaatttagaacatgtacctcgccttaaattggg
aaagttatttatatttatttcagcctcaacaaataaaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCATGAGGTGGCAGGGGACGGA 697 429 15 Antisense
TGAGGTGGCAGGGGACGGAACAAAA 445 555 21 Antisense
GACGGAACAAAAAGAAGCTTTCATG 81 377 34 Antisense
AAATTTAGAACATGTACCTCGCCTT 89 115 102 Antisense
TTAGAACATGTACCTCGCCTTAAAT 573 679 106 Antisense
GAACATGTACCTCGCCTTAAATTGG 109 351 109 Antisense
ACATGTACCTCGCCTTAAATTGGGA 408 101 111 Antisense
TGTACCTCGCCTTAAATTGGGAAAG 401 559 114 Antisense
AGTTATTTATATTTATTTCAGCCTC 386 63 137 Antisense
TTTATATTTATTTCAGCCTCAACAA 130 675 142 Antisense
ATTTCAGCCTCAACAAATAAAACTT 567 13 151 Antisense
Sequence Source Affymetrix Proprietary Database