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[172491_x_at]

Description F39F10.1 /REP_DB=WormBase Gene ID /WP=CE07203 /TR=Q20195 /GB=AAB00616.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 10.8
(-3)
A 		48.3
(-0.5)
A 		59.3
(0.3)
A 		100.3
(3)
A 		90
B 57.5
(1.3)
A 		64.7
(3)
A 		48.5
(-0.7)
A 		38.7
(-3)
A 		26
C 49.8
(1.8)
A 		17.6
(-3)
A 		39
(0.2)
A 		57.9
(3)
A 		40
avr 39.4
(-3) 		43.5
(-2.1) 		48.9
(-0.8) 		65.6
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 5.3
(-3)
A 		18.8
(-1.4)
A 		50.5
(2.4)
A 		55.1
(3)
A 		9.3
(-2.5)
A 		7.6
(-2.7)
A 		50
B 49.3
(2)
A 		22.4
(-0.8)
A 		59.3
(3)
A 		9.7
(-2.1)
A 		1.3
(-3)
A 		6.9
(-2.4)
A 		58
C 51.8
(0.9)
A 		56.8
(1.3)
A 		76.6
(3)
A 		37.4
(-0.4)
A 		6.4
(-3)
A 		16.4
(-2.1)
A 		70
avr 35.5
(0.2) 		32.7
(-0.1) 		62.1
(3) 		34.1
(0) 		5.7
(-3) 		10.3
(-2.5) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.9
(-3)
A 		10.5
(0.4)
A 		15.5
(3)
A 		14.7
(2.6)
A 		12
B 18.3
(3)
A 		16
(1.6)
A 		11.2
(-1.3)
A 		8.3
(-3)
A 		10
C 16.5
(3)
A 		5.1
(-3)
A 		13.6
(1.5)
A 		9.8
(-0.5)
A 		11
avr 12.9
(2) 		10.5
(-3) 		13.4
(3) 		10.9
(-2.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1
(-3)
A 		6.7
(-0.4)
A 		11
(1.6)
A 		14
(3)
A 		2.8
(-2.2)
A 		1.9
(-2.6)
A 		13
B 17.1
(3)
A 		7.4
(-0.5)
A 		14.4
(2)
A 		2.6
(-2.2)
A 		0.5
(-3)
A 		2.6
(-2.2)
A 		17
C 19.2
(2.9)
A 		17.3
(2.2)
A 		19.5
(3)
A 		7.5
(-1.1)
A 		2.1
(-3)
A 		5.5
(-1.8)
A 		17
avr 12.4
(1.8) 		10.5
(1) 		15
(3) 		8
(-0.2) 		1.8
(-3) 		3.3
(-2.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172491_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17880
Sequence Type Exemplar sequence
Representative Public ID F39F10.1 NCBI
Target Description F39F10.1 /REP_DB=WormBase Gene ID /WP=CE07203 /TR=Q20195 /GB=AAB00616.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000020494 ENSEMBL cdna:SNAP chromosome:CEL140:X:16905005:16905157:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16905004-16905157(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T29687 hypothetical protein F39F10.1 - Caenorhabditis elegans 4.0E-20
Sequence
Target Sequence 
>C. ELEGANS:172491_X_AT
atgtgtctctcaaagatggctatccgaaatgctgttatcgctattctccacgctcaccag
gggagcatcgcatctttcggtaccccagcaacaacagttgagaatgttgccgtcaaccgt
gct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGTCTCTCAAAGATGGCTATCC 13 51 13 Antisense
GTGTCTCTCAAAGATGGCTATCCGA 595 485 15 Antisense
GTCTCTCAAAGATGGCTATCCGAAA 130 469 17 Antisense
AGATGGCTATCCGAAATGCTGTTAT 686 67 26 Antisense
ATCCGAAATGCTGTTATCGCTATTC 588 37 34 Antisense
GAAATGCTGTTATCGCTATTCTCCA 407 361 38 Antisense
CACGCTCACCAGGGGAGCATCGCAT 204 201 61 Antisense
ACGCTCACCAGGGGAGCATCGCATC 549 91 62 Antisense
CGGTACCCCAGCAACAACAGTTGAG 499 243 90 Antisense
CAGTTGAGAATGTTGCCGTCAACCG 471 205 107 Antisense
TGAGAATGTTGCCGTCAACCGTGCT 389 569 111 Antisense
Sequence Source Affymetrix Proprietary Database