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[172489_x_at]

Description K08H10.2B /REP_DB=WormBase Gene ID /WP=CE21052 /TR=Q9XVV2 /GB=CAA98278.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 86      6grp_total > 38      4grp_total > 09      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1814
1 2 3 4 range
A 798.3
(-3)
P 		1196.9
(-1.6)
P 		1007.2
(-2.3)
P 		2472.6
(3)
P 		1674
B 820.6
(-3)
P 		836.3
(-2.9)
P 		903.8
(-2.7)
P 		2491
(3)
P 		1670
C 677.2
(-3)
P 		907.2
(-2.1)
P 		894.4
(-2.2)
P 		2247.4
(3)
P 		1570
avr 765.4
(-3) 		980.1
(-2.2) 		935.1
(-2.4) 		2403.7
(3) 		1638

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 841
1 2 3 4 5 6 range
A 1028.7
(0)
P 		1292
(1.9)
P 		606.2
(-3)
P 		688.2
(-2.4)
P 		883.5
(-1)
P 		1446.7
(3)
P 		841
B 1078.7
(0.7)
P 		1077.1
(0.7)
P 		710.1
(-2.3)
P 		618.1
(-3)
P 		861.3
(-1)
P 		1361.9
(3)
P 		744
C 1336.1
(2.9)
P 		1001.7
(-0)
P 		973
(-0.3)
P 		653.9
(-3)
P 		1352.5
(3)
P 		969
(-0.3)
P 		699
avr 1147.8
(1.9) 		1123.6
(1.7) 		763.1
(-1.9) 		653.4
(-3) 		1032.4
(0.8) 		1259.2
(3) 		606
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 290.7
(-1.2)
P 		259.8
(-3)
P 		263.3
(-2.8)
P 		361.9
(3)
P 		102
B 261.7
(-2)
P 		206.5
(-3)
P 		209.4
(-2.9)
P 		530.8
(3)
P 		324
C 224.2
(-3)
P 		260.8
(-1.6)
P 		311.7
(0.4)
P 		378.9
(3)
P 		155
avr 258.9
(-2.5) 		242.4
(-3) 		261.5
(-2.4) 		423.9
(3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 189.6
(-1.9)
P 		459.5
(3)
P 		132
(-3)
P 		174.6
(-2.2)
P 		266.6
(-0.5)
P 		352.2
(1)
P 		328
B 375.3
(0.7)
P 		358.5
(0.4)
P 		172.4
(-2.8)
P 		163.7
(-3)
P 		349.9
(0.2)
P 		507.8
(3)
P 		344
C 495.2
(3)
P 		305.7
(-0.1)
P 		247.6
(-1.1)
P 		131.5
(-3)
P 		437.7
(2.1)
P 		324.4
(0.2)
P 		364
avr 353.4
(2) 		374.6
(2.5) 		184
(-2.3) 		156.6
(-3) 		351.4
(1.9) 		394.8
(3) 		238
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172489_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11756
Sequence Type Exemplar sequence
Representative Public ID K08H10.2B NCBI
Target Description K08H10.2B /REP_DB=WormBase Gene ID /WP=CE21052 /TR=Q9XVV2 /GB=CAA98278.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073174(11), NM_001028873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073174 NCBI Caenorhabditis elegans K08H10.2a (K08H10.2) mRNA, complete cds. 11/11 None
NM_001028873 NCBI Caenorhabditis elegans K08H10.2b (K08H10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000037763 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10029043:10030302:1 11/11 None
K08H10.2a ENSEMBL cdna:known chromosome:CEL140:V:10025080:10030737:1 gene:K08H10.2 11/11 A 
K08H10.2b ENSEMBL cdna:known chromosome:CEL140:V:10026243:10030718:1 gene:K08H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10029055-10029123(+) 90.67 90.67
Public Domain and Genome References
Ensembl K08H10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98279 Hypothetical protein K08H10.2a [Caenorhabditis elegans] emb|CAB05548.2| Hypothetical protein K08H10.2a [Caenorhabditis elegans] ref|NP_505575.2| K08H10.2a [Caenorhabditis elegans] 0.0
blast CAA98278 Hypothetical protein K08H10.2b [Caenorhabditis elegans] emb|CAI46598.1| Hypothetical protein K08H10.2b [Caenorhabditis elegans] ref|NP_001024044.1| K08H10.2b [Caenorhabditis elegans] 0.0
blast CAE61080 Hypothetical protein CBG04830 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.3E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.6E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 8.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.0E-17
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 6.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 9.6E-11
Sequence
Target Sequence 
>C. ELEGANS:172489_X_AT
atgctgcgaagaacactgccgatgaagccaagaagacagccgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTGCGAAGAACACTGCCGATGA 292 43 13 Antisense
TGCTGCGAAGAACACTGCCGATGAA 194 583 14 Antisense
GCTGCGAAGAACACTGCCGATGAAG 127 297 15 Antisense
TGCGAAGAACACTGCCGATGAAGCC 58 585 17 Antisense
GCGAAGAACACTGCCGATGAAGCCA 287 289 18 Antisense
GAAGAACACTGCCGATGAAGCCAAG 154 341 20 Antisense
AGAACACTGCCGATGAAGCCAAGAA 368 73 22 Antisense
GAACACTGCCGATGAAGCCAAGAAG 477 351 23 Antisense
ACACTGCCGATGAAGCCAAGAAGAC 220 109 25 Antisense
GCCGATGAAGCCAAGAAGACAGCCG 671 283 30 Antisense
GATGAAGCCAAGAAGACAGCCGAAC 176 413 33 Antisense
Sequence Source Affymetrix Proprietary Database