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[172488_x_at]

Description F09C11.1 /REP_DB=WormBase Gene ID /WP=CE16970 /TR=O44141 /GB=AAB88323.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 12.1
(-3)
A 		29.8
(-1)
A 		34.3
(-0.5)
A 		64.4
(3)
A 		52
B 41.8
(3)
A 		30.5
(-2.1)
A 		30.8
(-1.9)
A 		28.4
(-3)
A 		13
C 21.6
(-3)
A 		59.1
(1.3)
A 		26.2
(-2.5)
A 		73.8
(3)
P 		52
avr 25.2
(-3) 		39.8
(-0.1) 		30.4
(-2) 		55.5
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 8.7
(-2.1)
A 		18.7
(-0.1)
A 		21.1
(0.4)
A 		23.4
(0.8)
A 		4.3
(-3)
A 		34.3
(3)
A 		30
B 30.4
(2.1)
A 		33.9
(3)
A 		9.9
(-3)
A 		14.5
(-1.9)
A 		23.4
(0.3)
A 		34.1
(3)
A 		24
C 11.2
(-2.2)
A 		50.7
(3)
P 		5.5
(-3)
A 		30
(0.3)
A 		22.9
(-0.7)
A 		31.9
(0.5)
A 		45
avr 16.8
(-1.8) 		34.4
(3) 		12.2
(-3) 		22.6
(-0.2) 		16.9
(-1.7) 		33.4
(2.7) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.4
(-3)
A 		6.5
(-0.5)
A 		9
(2.5)
A 		9.4
(3)
A 		5
B 13.3
(3)
A 		7.5
(-1.8)
A 		7.1
(-2.2)
A 		6.1
(-3)
A 		7
C 7.2
(-3)
A 		17
(3)
A 		9.1
(-1.8)
A 		12.4
(0.2)
P 		10
avr 8.3
(-3) 		10.3
(3) 		8.4
(-2.7) 		9.3
(0) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.6
(-2.7)
A 		6.7
(1.6)
A 		4.6
(-0.2)
A 		5.9
(0.9)
A 		1.3
(-3)
A 		8.4
(3)
A 		7
B 10.6
(1.8)
A 		11.3
(2.2)
A 		2.4
(-3)
A 		3.8
(-2.2)
A 		9.5
(1.1)
A 		12.7
(3)
A 		10
C 4.1
(-1.9)
A 		15.5
(3)
P 		1.4
(-3)
A 		6
(-1)
A 		7.4
(-0.4)
A 		10.7
(1)
A 		14
avr 5.4
(-1.1) 		11.2
(3) 		2.8
(-3) 		5.2
(-1.3) 		6.1
(-0.6) 		10.6
(2.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172488_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10817
Sequence Type Exemplar sequence
Representative Public ID F09C11.1 NCBI
Target Description F09C11.1 /REP_DB=WormBase Gene ID /WP=CE16970 /TR=O44141 /GB=AAB88323.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067544(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067544 NCBI Caenorhabditis elegans F09C11.1 (F09C11.1) mRNA, complete cds. 11/11 None
F09C11.1 ENSEMBL cdna:known chromosome:CEL140:IV:543231:544086:-1 gene:F09C11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:543230-544086(-) 86.4 100.0
Public Domain and Genome References
Gene Title
Ensembl F09C11.1
Entrez Gene 184237 Entrez gene
SwissProt O44141 EMBL-EBI
WormBase CE16970 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88323 Hypothetical protein F09C11.1 [Caenorhabditis elegans] ref|NP_499945.1| F09C11.1 [Caenorhabditis elegans] 1.0E-76
Sequence
Target Sequence 
>C. ELEGANS:172488_X_AT
ggaaaacgggaagagtgattcattaataattaaatatgttgagccgtgcaattcgagtac
accagggagcttcaacgatttgcagccttcaattttagtttcaattttagaaaaaattgg
caaggaagaaataagcccaagaaaaacaagattatcctcagaaaatacaaaaaataatga
aaatttagaaaaaaaacaattttttttgaaaacagaaaatcaatttttttgttttttgaa
tattgttttcaaaaaatttacaatttgttcggnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnggaagatcgaaatttttttcagatgattccattttctgacactacag

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAACGGGAAGAGTGATTCATTA 704 527 69 Antisense
AAATATGTTGAGCCGTGCAATTCGA 424 115 100 Antisense
GAGCCGTGCAATTCGAGTACACCAG 645 385 109 Antisense
GCAATTCGAGTACACCAGGGAGCTT 475 321 116 Antisense
GTACACCAGGGAGCTTCAACGATTT 139 459 125 Antisense
GGAGCTTCAACGATTTGCAGCCTTC 474 519 134 Antisense
GCTTCAACGATTTGCAGCCTTCAAT 570 305 137 Antisense
TGCAGCCTTCAATTTTAGTTTCAAT 32 579 149 Antisense
GCCCAAGAAAAACAAGATTATCCTC 544 283 203 Antisense
ATTTTTTTCAGATGATTCCATTTTC 237 15 389 Antisense
ATGATTCCATTTTCTGACACTACAG 367 47 400 Antisense
Sequence Source Affymetrix Proprietary Database