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[172486_x_at]

Description T23B7.1 /REP_DB=WormBase Gene ID /WP=CE02882 /TR=Q22693 /GB=AAA91245.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 06      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 46.4
(-0.4)
A 		18.3
(-3)
A 		22.3
(-2.6)
A 		83.1
(3)
A 		65
B 57.1
(3)
A 		3.8
(-3)
A 		14.8
(-1.8)
A 		43.1
(1.4)
A 		53
C 46.9
(-1)
A 		17
(-3)
A 		43.1
(-1.3)
A 		107.3
(3)
P 		90
avr 50.1
(0.4) 		13
(-3) 		26.7
(-1.7) 		77.8
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1420
1 2 3 4 5 6 range
A 48.8
(-2.9)
A 		32.6
(-3)
A 		114.6
(-2.6)
P 		147.3
(-2.4)
P 		947.5
(1.7)
P 		1208.1
(3)
P 		1176
B 25.2
(-3)
A 		63.3
(-2.8)
P 		17
(-3)
A 		130.6
(-2.5)
P 		1217.5
(2.2)
P 		1402.9
(3)
P 		1386
C 17.4
(-3)
A 		58.3
(-2.8)
P 		38.2
(-2.9)
A 		81.4
(-2.7)
A 		929.7
(0.9)
P 		1436.5
(3)
P 		1419
avr 30.5
(-3) 		51.4
(-2.9) 		56.6
(-2.9) 		119.8
(-2.6) 		1031.6
(1.6) 		1349.2
(3) 		1319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16.9
(3)
A 		4
(-3)
A 		5.8
(-2.2)
A 		12.2
(0.8)
A 		13
B 18.2
(3)
A 		0.9
(-3)
A 		3.4
(-2.1)
A 		9.2
(-0.1)
A 		17
C 15.5
(1.8)
A 		4.9
(-3)
A 		15
(1.6)
A 		18.1
(3)
P 		13
avr 16.9
(3) 		3.3
(-3) 		8.1
(-0.9) 		13.2
(1.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 9
(-3)
A 		11.6
(-2.9)
A 		25
(-2.7)
P 		37.4
(-2.4)
P 		285.9
(2.8)
P 		294.1
(3)
P 		285
B 8.8
(-2.9)
A 		21.1
(-2.8)
P 		4.1
(-3)
A 		34.6
(-2.6)
P 		494.7
(2.7)
P 		523.1
(3)
P 		519
C 6.5
(-3)
A 		17.8
(-2.9)
P 		9.7
(-3)
A 		16.4
(-2.9)
A 		300.8
(0.7)
P 		480.9
(3)
P 		474
avr 8.1
(-3) 		16.8
(-2.9) 		12.9
(-2.9) 		29.5
(-2.7) 		360.5
(2) 		432.7
(3) 		425
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172486_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5285
Sequence Type Exemplar sequence
Representative Public ID T23B7.1 NCBI
Target Description T23B7.1 /REP_DB=WormBase Gene ID /WP=CE02882 /TR=Q22693 /GB=AAA91245.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062470 NCBI Caenorhabditis elegans T23B7.1 (T23B7.1) mRNA, complete cds. 11/11 A 
SNAP00000040845 ENSEMBL cdna:SNAP chromosome:CEL140:II:4842595:4842810:1 11/11 None
GENEFINDER00000040847 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4842595:4842810:1 11/11 None
T23B7.1 ENSEMBL cdna:known chromosome:CEL140:II:4842595:4842810:1 gene:T23B7.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068329 1/11 Cross Hyb Matching Probes A 
NM_062474 8/11 Cross Hyb Matching Probes A 
GENEFINDER00000024763 1/11 Cross Hyb Matching Probes None
SNAP00000024738 1/11 Cross Hyb Matching Probes None
SNAP00000005480 8/11 Cross Hyb Matching Probes None
GENEFINDER00000005501 8/11 Cross Hyb Matching Probes None
SNAP00000024206 1/11 Cross Hyb Matching Probes None
SNAP00000024208 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024211 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024214 3/11 Cross Hyb Matching Probes None
ZK337.1c.2 1/11 Cross Hyb Matching Probes None
F11G11.8 8/11 Cross Hyb Matching Probes None
C24D10.7 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4842593-4842809(+) 100.0 100.0
chrII:4860130-4860346(-) 99.07 99.07
chrIV:5162821-5163037(-) 91.2 91.2
chrIV:5165506-5165722(-) 91.67 91.67
Public Domain and Genome References
Gene Title
Ensembl T23B7.1
Entrez Gene 173835 Entrez gene
SwissProt Q22693 EMBL-EBI
WormBase CE02882 Wormbase
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 3.7E-51
Sequence
Target Sequence 
>C. ELEGANS:172486_X_AT
ggcggacaagtcggcatacatgggcgctggaggctatggatcaggctacatgggatccaa
tgcctcgtcgtcgggatatgcccgcgaagactatgcacaaggagggaatggtggtggaca
acaacagcagaaccagggttccggaggaaacaccaacccaggtggacaggtcttcaaggc
ccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGACAAGTCGGCATACATGGGC 272 541 15 Antisense
CAAGTCGGCATACATGGGCGCTGGA 244 183 21 Antisense
GGGCGCTGGAGGCTATGGATCAGGC 324 493 36 Antisense
GGCTATGGATCAGGCTACATGGGAT 593 537 46 Antisense
TACATGGGATCCAATGCCTCGTCGT 583 641 61 Antisense
CTCGTCGTCGGGATATGCCCGCGAA 636 217 78 Antisense
GCCCGCGAAGACTATGCACAAGGAG 587 285 94 Antisense
GGGAATGGTGGTGGACAACAACAGC 555 493 118 Antisense
ACAACAACAGCAGAACCAGGGTTCC 53 111 132 Antisense
GAGGAAACACCAACCCAGGTGGACA 276 405 158 Antisense
CAGGTGGACAGGTCTTCAAGGCCCG 454 207 173 Antisense
Sequence Source Affymetrix Proprietary Database