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[172485_x_at]

Description C07D8.4 /REP_DB=WormBase Gene ID /WP=CE06774 /TR=P91022 /GB=AAB37975.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 32.1
(-3)
A 		36.5
(-2.4)
A 		44.8
(-1.4)
A 		78.5
(3)
A 		46
B 46.7
(-0.1)
A 		13.4
(-2.8)
A 		11
(-3)
A 		85.2
(3)
A 		74
C 39.4
(-0.1)
A 		71.7
(3)
A 		8.2
(-3)
A 		13.4
(-2.5)
A 		64
avr 39.4
(-0.1) 		40.5
(0.1) 		21.3
(-3) 		59
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 9.8
(0.4)
A 		4.3
(-3)
A 		14.1
(3)
A 		7.4
(-1.1)
A 		6.8
(-1.5)
A 		8.2
(-0.6)
A 		10
B 37.1
(3)
A 		15.4
(-1.3)
A 		9.4
(-2.5)
A 		6.7
(-3)
A 		7.5
(-2.8)
A 		30.6
(1.7)
A 		30
C 6.5
(-2.3)
A 		5.5
(-2.7)
A 		4.5
(-3)
A 		8.7
(-1.5)
A 		21.8
(3)
A 		6.8
(-2.2)
A 		17
avr 17.8
(3) 		8.4
(-2.5) 		9.3
(-2) 		7.6
(-3) 		12
(-0.4) 		15.2
(1.5) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11.7
(3)
A 		7.9
(-3)
A 		11.7
(3)
A 		11.5
(2.7)
A 		4
B 14.9
(1.7)
A 		3.3
(-2.7)
A 		2.6
(-3)
A 		18.2
(3)
A 		16
C 13.1
(0.5)
A 		20.6
(3)
A 		2.9
(-2.8)
A 		2.3
(-3)
A 		18
avr 13.2
(3) 		10.6
(0.9) 		5.7
(-3) 		10.7
(1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.8
(-1.9)
A 		1.5
(-3)
A 		3.1
(3)
A 		1.9
(-1.5)
A 		2
(-1.1)
A 		2
(-1.1)
A 		2
B 12.9
(3)
A 		5.1
(-1.2)
A 		2.3
(-2.7)
A 		1.8
(-3)
A 		3
(-2.4)
A 		11.4
(2.2)
A 		11
C 2.4
(-1.7)
A 		1.7
(-2.4)
A 		1.1
(-3)
A 		1.8
(-2.3)
A 		7.1
(3)
A 		2.3
(-1.8)
A 		6
avr 5.7
(3) 		2.8
(-1.5) 		2.2
(-2.4) 		1.8
(-3) 		4
(0.4) 		5.2
(2.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172485_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16471
Sequence Type Exemplar sequence
Representative Public ID C07D8.4 NCBI
Target Description C07D8.4 /REP_DB=WormBase Gene ID /WP=CE06774 /TR=P91022 /GB=AAB37975.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C07D8.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C07D8.4 C07D8.4 /REP_DB=WormBase Gene ID /WP=CE06774 /TR=P91022 /GB=AAB37975.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026839 5/11 Cross Hyb Matching Probes None
GENEFINDER00000027207 5/11 Cross Hyb Matching Probes None
GENEFINDER00000015142 3/11 Cross Hyb Matching Probes None
GENEFINDER00000023235 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7345412-7345538(+) 53.17 100.0
Sequence
Target Sequence 
>C. ELEGANS:172485_X_AT
tgacgaagaggttcatggacgattcgcttccgcttcactttactgctcaatctggatccc
ccggaggagaggagatcttgatcaccttcggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGAAGAGGTTCATGGACGATTC 531 567 14 Antisense
GAAGAGGTTCATGGACGATTCGCTT 230 339 18 Antisense
AGAGGTTCATGGACGATTCGCTTCC 246 69 20 Antisense
CTTCACTTTACTGCTCAATCTGGAT 557 221 46 Antisense
TCACTTTACTGCTCAATCTGGATCC 428 627 48 Antisense
TCTGGATCCCCCGGAGGAGAGGAGA 419 607 64 Antisense
GGATCCCCCGGAGGAGAGGAGATCT 239 513 67 Antisense
ATCCCCCGGAGGAGAGGAGATCTTG 426 33 69 Antisense
CCCCCGGAGGAGAGGAGATCTTGAT 219 257 71 Antisense
GAGAGGAGATCTTGATCACCTTCGG 219 395 80 Antisense
AGGAGATCTTGATCACCTTCGGAGA 340 55 83 Antisense
Sequence Source Affymetrix Proprietary Database