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[172483_x_at]

Description F02D10.2 /REP_DB=WormBase Gene ID /WP=CE03137 /TR=Q19112 /GB=CAA91933.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 5.5
(-3)
A 		29.4
(-1.8)
A 		25.6
(-2)
A 		124.7
(3)
P 		119
B 42.7
(2.7)
M 		44.4
(3)
A 		12.2
(-3)
A 		31.5
(0.6)
A 		32
C 30.2
(-1.9)
A 		15.4
(-2.6)
A 		7.9
(-3)
A 		132.8
(3)
P 		125
avr 26.1
(-2.2) 		29.7
(-1.9) 		15.2
(-3) 		96.3
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 57.6
(1.3)
A 		29.9
(-1.3)
A 		11.1
(-3)
A 		76.6
(3)
A 		63.1
(1.8)
A 		45.6
(0.2)
A 		66
B 26.9
(-2.3)
A 		52.1
(0.9)
P 		68.2
(3)
A 		43.5
(-0.2)
A 		21.5
(-3)
A 		64.4
(2.5)
A 		47
C 20.7
(-3)
A 		47.2
(-0.4)
A 		24.9
(-2.6)
A 		81.1
(3)
A 		21.5
(-2.9)
A 		73.4
(2.2)
A 		60
avr 35.1
(-2.9) 		43.1
(-1.4) 		34.7
(-3) 		67.1
(3) 		35.4
(-2.9) 		61.1
(1.9) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2
(-3)
A 		6.4
(-1.4)
A 		6.7
(-1.3)
A 		18.2
(3)
P 		16
B 13.6
(3)
M 		11
(1.6)
A 		2.8
(-3)
A 		6.7
(-0.8)
A 		11
C 10
(-0.8)
A 		4.4
(-2.5)
A 		2.7
(-3)
A 		22.4
(3)
P 		20
avr 8.5
(-0.7) 		7.3
(-1.4) 		4.1
(-3) 		15.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.6
(-0.1)
A 		10.6
(-0.1)
A 		2.4
(-3)
A 		19.4
(3)
A 		19
(2.9)
A 		11.1
(0.1)
A 		17
B 9.4
(-2.7)
A 		17.3
(0.4)
P 		16.6
(0.1)
A 		11.5
(-1.9)
A 		8.7
(-3)
A 		24
(3)
A 		15
C 7.7
(-2.5)
A 		14.4
(-0.3)
A 		6.3
(-3)
A 		16.3
(0.3)
A 		7
(-2.8)
A 		24.6
(3)
A 		18
avr 9.2
(-2.6) 		14.1
(-0) 		8.4
(-3) 		15.7
(0.8) 		11.6
(-1.3) 		19.9
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172483_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17972
Sequence Type Exemplar sequence
Representative Public ID F02D10.2 NCBI
Target Description F02D10.2 /REP_DB=WormBase Gene ID /WP=CE03137 /TR=Q19112 /GB=CAA91933.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077845 NCBI Caenorhabditis elegans F02D10.2 (F02D10.2) mRNA, complete cds. 11/11 None
F02D10.2 ENSEMBL cdna:known chromosome:CEL140:X:13463393:13463814:-1 gene:F02D10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039148 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13463392-13463814(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02D10.2
Entrez Gene 184082 Entrez gene
SwissProt Q19112 EMBL-EBI
WormBase CE03137 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91933 Hypothetical protein F02D10.2 [Caenorhabditis elegans] ref|NP_510246.1| F02D10.2 [Caenorhabditis elegans] 8.0E-23
Sequence
Target Sequence 
>C. ELEGANS:172483_X_AT
atgtattccaaccttcttggaggaaaaaaagataacgtgggctctgttgctcgccatatc
aaaaaccataactcaaaaaaaaaagaaaaccgcatgaagagaagatgtatggctccacag
aaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTATTCCAACCTTCTTGGAGGAA 455 47 13 Antisense
TGTATTCCAACCTTCTTGGAGGAAA 480 559 14 Antisense
AAAAGATAACGTGGGCTCTGTTGCT 321 131 39 Antisense
CTCTGTTGCTCGCCATATCAAAAAC 109 233 54 Antisense
CTGTTGCTCGCCATATCAAAAACCA 497 239 56 Antisense
GTTGCTCGCCATATCAAAAACCATA 538 439 58 Antisense
GCTCGCCATATCAAAAACCATAACT 377 299 61 Antisense
GCCATATCAAAAACCATAACTCAAA 475 279 65 Antisense
AAAAGAAAACCGCATGAAGAGAAGA 350 119 93 Antisense
GAAGAGAAGATGTATGGCTCCACAG 256 339 108 Antisense
GAGAAGATGTATGGCTCCACAGAAA 369 391 111 Antisense
Sequence Source Affymetrix Proprietary Database