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[172481_x_at]

Description C08F1.4 /REP_DB=WormBase Gene ID /WP=CE27059 /TR=O17175 /GB=AAK31407.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 55      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 73      6grp_total > 55      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 296.4
(-0.4)
P 		197.6
(-2.7)
P 		182.9
(-3)
P 		442.5
(3)
P 		260
B 323.5
(0.9)
P 		176.3
(-2.6)
P 		158.4
(-3)
P 		414.5
(3)
P 		256
C 360.8
(1.6)
P 		175.2
(-3)
P 		237.6
(-1.5)
P 		417
(3)
P 		242
avr 326.9
(0.6) 		183
(-3) 		193
(-2.8) 		424.7
(3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 357.6
(-2.4)
P 		739.7
(2.4)
P 		461
(-1.1)
P 		785.6
(3)
P 		306.8
(-3)
P 		611.5
(0.8)
P 		479
B 274.9
(-3)
P 		550.7
(1.5)
P 		627.6
(2.8)
P 		362.8
(-1.6)
P 		328
(-2.1)
P 		642.6
(3)
P 		368
C 395
(-1.3)
P 		726.9
(2.2)
P 		532.7
(0.1)
P 		336.5
(-1.9)
P 		232.9
(-3)
P 		806.5
(3)
P 		574
avr 342.5
(-2.2) 		672.4
(2.8) 		540.4
(0.8) 		495
(0.1) 		289.2
(-3) 		686.9
(3) 		398
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 107.9
(3)
P 		42.9
(-3)
P 		47.8
(-2.5)
P 		64.8
(-1)
P 		65
B 103.2
(3)
P 		43.5
(-2.4)
P 		36.7
(-3)
P 		88.3
(1.7)
P 		67
C 119.4
(3)
P 		50.4
(-3)
P 		82.8
(-0.2)
P 		70.3
(-1.3)
P 		69
avr 110.2
(3) 		45.6
(-3) 		55.8
(-2.1) 		74.5
(-0.3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 65.9
(-3)
P 		263.1
(3)
P 		100.4
(-2)
P 		199.2
(1.1)
P 		92.6
(-2.2)
P 		148.9
(-0.5)
P 		197
B 95.6
(-3)
P 		183.3
(0.7)
P 		152.4
(-0.6)
P 		96.1
(-3)
P 		133.3
(-1.4)
P 		239.6
(3)
P 		144
C 146.4
(-0.7)
P 		221.8
(1.6)
P 		135.6
(-1)
P 		67.7
(-3)
P 		75.4
(-2.8)
P 		270
(3)
P 		202
avr 102.6
(-2.9) 		222.7
(3) 		129.5
(-1.6) 		121
(-2) 		100.4
(-3) 		219.5
(2.8) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172481_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4860
Sequence Type Exemplar sequence
Representative Public ID C08F1.4 NCBI
Target Description C08F1.4 /REP_DB=WormBase Gene ID /WP=CE27059 /TR=O17175 /GB=AAK31407.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061675(11), NM_182202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061675 NCBI Caenorhabditis elegans C08F1.4a (C08F1.4) mRNA, complete cds. 11/11 None
NM_182202 NCBI Caenorhabditis elegans C08F1.4b (C08F1.4) mRNA, complete cds. 11/11 None
SNAP00000012039 ENSEMBL cdna:SNAP chromosome:CEL140:II:1776438:1778150:1 11/11 None
GENEFINDER00000012056 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1776036:1778491:1 11/11 None
C08F1.4a ENSEMBL cdna:known chromosome:CEL140:II:1776313:1778529:1 gene:C08F1.4 11/11 None
C08F1.4b ENSEMBL cdna:known chromosome:CEL140:II:1776313:1778507:1 gene:C08F1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182203 3/11 Cross Hyb Matching Probes A 
NM_182204 3/11 Cross Hyb Matching Probes A 
NM_061674 3/11 Cross Hyb Matching Probes A 
NM_061676 1/11 Cross Hyb Matching Probes A 
SNAP00000012040 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012054 1/11 Cross Hyb Matching Probes None
SNAP00000028525 3/11 Cross Hyb Matching Probes None
SNAP00000028526 3/11 Cross Hyb Matching Probes None
GENEFINDER00000028541 3/11 Cross Hyb Matching Probes None
GENEFINDER00000028546 3/11 Cross Hyb Matching Probes None
F36H5.2b 3/11 Cross Hyb Matching Probes A 
F36H5.2c.2 3/11 Cross Hyb Matching Probes A 
F36H5.2c.1 3/11 Cross Hyb Matching Probes A 
F36H5.1.2 3/11 Cross Hyb Matching Probes None
F36H5.1.1 3/11 Cross Hyb Matching Probes None
C08F1.5 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1776311-1778149(+) 100.0 100.0
Public Domain and Genome References
Ensembl C08F1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31407 Hypothetical protein C08F1.4a [Caenorhabditis elegans] ref|NP_494076.1| C08F1.4a [Caenorhabditis elegans] 0.0
blast T32337 hypothetical protein C08F1.4 - Caenorhabditis elegans 0.0
blast AAK31520 Hypothetical protein F36H5.1 [Caenorhabditis elegans] ref|NP_494075.1| F36H5.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.4E-30
Pfam IPR002083 EMBL-EBI MATH 3.1E-15
Pfam IPR002083 EMBL-EBI MATH 1.5E-39
Pfam IPR002083 EMBL-EBI MATH 1.0E-4
Pfam IPR002083 EMBL-EBI MATH 1.4E-30
Pfam IPR002083 EMBL-EBI MATH 1.1E-23
Pfam IPR002083 EMBL-EBI MATH 1.5E-39
Pfam IPR002083 EMBL-EBI MATH 2.5E-7
Pfam IPR002083 EMBL-EBI MATH 8.5E-14
Pfam IPR002083 EMBL-EBI MATH 1.0E-4
Pfam IPR002083 EMBL-EBI MATH 1.4E-30
Pfam IPR002083 EMBL-EBI MATH 1.1E-23
Pfam IPR002083 EMBL-EBI MATH 1.5E-39
Pfam IPR002083 EMBL-EBI MATH 2.8E-11
Sequence
Target Sequence 
>C. ELEGANS:172481_X_AT
tagagtcttttctcaatccgcttgaagacagtttgatcgtcgaagctcatgttaaaattt
tcatggttgaagaattttcgcgtaaaattctgcaaaacgaaagaagttttttgatgtcac
atgtggttagaaacgtttcgaatatggtagaaggaggagtaatttttagcgcttcgcaag
aatggtacgacattccatggagtatttctatgaagtacatcaatggatttgttgaattac
ttctaagttgtgacaaagagttaaacgcgcatgaagcatggagcatcgaaactaattttc
aactgatacttgttggagcaaatggtaaaagactcactgactattttgagcatacttttg
aaaagcccgattcgattggggattcgaaactcattagatgggaggatatgttggatcagt
atgcggtggaggatagtttgacagttgaagcacgagtgaattttataatgcttatcgaac
ctcaaccggagtactcgttcataatgtctcataccgtcaaaaatctatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGAGTCTTTTCTCAATCCGCTTGA 583 651 896 Antisense
GACAGTTTGATCGTCGAAGCTCATG 33 369 922 Antisense
GGAGGAGTAATTTTTAGCGCTTCGC 704 515 1048 Antisense
AGCGCTTCGCAAGAATGGTACGACA 251 83 1063 Antisense
GGTACGACATTCCATGGAGTATTTC 345 505 1079 Antisense
GTGACAAAGAGTTAAACGCGCATGA 230 481 1145 Antisense
AAAGCCCGATTCGATTGGGGATTCG 152 121 1257 Antisense
TAATGCTTATCGAACCTCAACCGGA 224 633 1361 Antisense
TCGAACCTCAACCGGAGTACTCGTT 107 523 1370 Antisense
GTACTCGTTCATAATGTCTCATACC 396 459 1386 Antisense
GTCTCATACCGTCAAAAATCTATCA 498 467 1401 Antisense
Sequence Source Affymetrix Proprietary Database