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[172480_x_at]

Description C41D7.1 /REP_DB=WormBase Gene ID /WP=CE08656 /TR=O16529 /GB=AAC48224.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 0.6
(-3)
A 		8.9
(0.1)
A 		0.5
(-3)
A 		16.9
(3)
A 		16
B 0.5
(-3)
A 		5
(-1.3)
A 		7.8
(-0.2)
A 		16.1
(3)
A 		16
C 11.3
(-0.2)
A 		1.9
(-2.6)
A 		0.3
(-3)
A 		24.2
(3)
P 		24
avr 4.1
(-2.6) 		5.3
(-2.1) 		2.9
(-3) 		19.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 2.1
(-1)
A 		0.9
(-2.7)
A 		5
(3)
A 		1.2
(-2.3)
A 		0.9
(-2.7)
A 		0.7
(-3)
A 		4
B 1.2
(-2.5)
A 		1.8
(-2.2)
A 		0.3
(-3)
A 		11.5
(3)
A 		1.3
(-2.5)
A 		5.3
(-0.3)
A 		11
C 0.6
(-3)
A 		0.5
(-3)
A 		2
(-2.6)
A 		1.2
(-2.8)
A 		23.8
(3)
A 		0.6
(-3)
A 		23
avr 1.3
(-2.8) 		1.1
(-3) 		2.4
(-2) 		4.6
(-0.2) 		8.7
(3) 		2.2
(-2.1) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.2
(-2.8)
A 		1.9
(1.5)
A 		0.1
(-3)
A 		2.5
(3)
A 		2
B 0.1
(-3)
A 		1.2
(-1)
A 		1.8
(0.1)
A 		3.4
(3)
A 		3
C 3.7
(2.4)
A 		0.5
(-2.4)
A 		0.1
(-3)
A 		4.1
(3)
P 		4
avr 1.3
(-1.6) 		1.2
(-1.8) 		0.7
(-3) 		3.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.4
(-1.7)
A 		0.3
(-2.3)
A 		1.1
(3)
A 		0.3
(-2.3)
A 		0.3
(-2.3)
A 		0.2
(-3)
A 		1
B 0.4
(-2.4)
A 		0.6
(-2)
A 		0.1
(-3)
A 		3
(3)
A 		0.5
(-2.2)
A 		2
(0.9)
A 		3
C 0.2
(-2.9)
A 		0.1
(-3)
A 		0.5
(-2.7)
A 		0.3
(-2.8)
A 		7.7
(3)
A 		0.2
(-2.9)
A 		8
avr 0.3
(-3) 		0.3
(-3) 		0.6
(-2.3) 		1.2
(-0.8) 		2.8
(3) 		0.8
(-1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172480_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5199
Sequence Type Exemplar sequence
Representative Public ID C41D7.1 NCBI
Target Description C41D7.1 /REP_DB=WormBase Gene ID /WP=CE08656 /TR=O16529 /GB=AAC48224.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061316 NCBI Caenorhabditis elegans C41D7.1 (C41D7.1) mRNA, complete cds. 11/11 None
C41D7.1 ENSEMBL cdna:known chromosome:CEL140:II:356608:357457:-1 gene:C41D7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:356607-357457(-) 58.53 100.0
Public Domain and Genome References
Gene Title
Ensembl C41D7.1
Entrez Gene 183376 Entrez gene
SwissProt O16529 EMBL-EBI
WormBase CE08656 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48224 Hypothetical protein C41D7.1 [Caenorhabditis elegans] ref|NP_493717.1| C41D7.1 [Caenorhabditis elegans] 4.0E-48
Sequence
Target Sequence 
>C. ELEGANS:172480_X_AT
aaattcacacaaattctctggtattttcataaaatttcaaaaattccaaatttccagaat
actcgaagaaaaaataaaaacaatttttcaatatttcatgctcacagattttggattttt
tcaaataatgttccttatatattttcaacaaacttctttccagataatccacgtgatcat
caaaatttcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCACACAAATTCTCTGGTATT 492 115 22 Antisense
TCACACAAATTCTCTGGTATTTTCA 537 627 26 Antisense
TCCAAATTTCCAGAATACTCGAAGA 283 559 66 Antisense
TTTCAATATTTCATGCTCACAGATT 195 673 107 Antisense
TATTTCATGCTCACAGATTTTGGAT 145 661 113 Antisense
TGCTCACAGATTTTGGATTTTTTCA 265 581 120 Antisense
GTTCCTTATATATTTTCAACAAACT 428 441 151 Antisense
ATTTTCAACAAACTTCTTTCCAGAT 438 15 162 Antisense
AACTTCTTTCCAGATAATCCACGTG 541 139 172 Antisense
TCCAGATAATCCACGTGATCATCAA 161 591 180 Antisense
CCACGTGATCATCAAAATTTCACTG 341 275 190 Antisense
Sequence Source Affymetrix Proprietary Database