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[172479_x_at]

Description F46F5.8 /REP_DB=WormBase Gene ID /WP=CE19424 /TR=Q9TXY3 /GB=AAC78187.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 2.2
(-3)
A 		12.7
(-1.9)
A 		3.1
(-2.9)
A 		58.8
(3)
A 		57
B 2.1
(-3)
A 		3.8
(-2.5)
A 		24.7
(3)
A 		10.2
(-0.8)
A 		23
C 5.2
(-2.7)
A 		2.1
(-3)
A 		1.8
(-3)
A 		72.6
(3)
P 		71
avr 3.2
(-3) 		6.2
(-2.6) 		9.9
(-2.1) 		47.2
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 6
(1.1)
A 		2.7
(-2.9)
A 		3.1
(-2.4)
A 		7.6
(3)
A 		2.6
(-3)
A 		3.3
(-2.2)
A 		5
B 1.6
(-3)
A 		2
(-2.6)
A 		1.8
(-2.8)
A 		8.4
(3)
A 		4
(-0.9)
A 		3
(-1.8)
A 		7
C 1.8
(-3)
A 		8.1
(3)
A 		2.9
(-2)
A 		6.3
(1.3)
A 		3.4
(-1.5)
A 		7
(2)
A 		6
avr 3.1
(-2.4) 		4.3
(-0.9) 		2.6
(-3) 		7.4
(3) 		3.3
(-2.1) 		4.4
(-0.8) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.8
(-3)
A 		2.8
(-1.5)
A 		0.8
(-3)
A 		8.6
(3)
A 		8
B 0.7
(-3)
A 		0.9
(-2.8)
A 		5.7
(3)
A 		2.2
(-1.2)
A 		5
C 1.7
(-2.4)
A 		0.6
(-3)
A 		0.6
(-3)
A 		12.2
(3)
P 		12
avr 1.1
(-3) 		1.4
(-2.7) 		2.4
(-1.8) 		7.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(-1)
A 		0.9
(-2)
A 		0.7
(-3)
A 		1.9
(3)
A 		0.8
(-2.5)
A 		0.8
(-2.5)
A 		1
B 0.5
(-2.7)
A 		0.7
(-2)
A 		0.4
(-3)
A 		2.2
(3)
A 		1.6
(1)
A 		1.1
(-0.7)
A 		2
C 0.7
(-3)
A 		2.5
(3)
A 		0.7
(-3)
A 		1.3
(-1)
A 		1.1
(-1.7)
A 		2.4
(2.7)
A 		2
avr 0.8
(-2) 		1.4
(1) 		0.6
(-3) 		1.8
(3) 		1.2
(-0) 		1.4
(1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172479_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5389
Sequence Type Exemplar sequence
Representative Public ID F46F5.8 NCBI
Target Description F46F5.8 /REP_DB=WormBase Gene ID /WP=CE19424 /TR=Q9TXY3 /GB=AAC78187.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061420 NCBI Caenorhabditis elegans F46F5.8 (F46F5.8) mRNA, complete cds. 11/11 None
F46F5.8 ENSEMBL cdna:known chromosome:CEL140:II:821414:821620:-1 gene:F46F5.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068791 1/11 Cross Hyb Matching Probes A 
SNAP00000002763 1/11 Cross Hyb Matching Probes None
F13B6.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:821413-821620(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F5.8
Entrez Gene 185861 Entrez gene
SwissProt Q9TXY3 EMBL-EBI
WormBase CE19424 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78187 Hypothetical protein F46F5.8 [Caenorhabditis elegans] ref|NP_493821.1| F46F5.8 [Caenorhabditis elegans] 7.0E-34
blast AAB92044 Hypothetical protein F13B6.2 [Caenorhabditis elegans] ref|NP_501192.1| F13B6.2 [Caenorhabditis elegans] 9.0E-15
Sequence
Target Sequence 
>C. ELEGANS:172479_X_AT
atggattccgatggatttcgctgtgtagggatttgcacaaaaaattatcaaaaattggaa
gtcctgaagatcgcgttgacagctgcatgggacaatctagacgccaactacccccgtgcc
gtcgtcgactcacacccgaagggacttcggccgttattaaatcaaaaggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATTCCGATGGATTTCGCTGTG 429 51 13 Antisense
GATTCCGATGGATTTCGCTGTGTAG 583 433 16 Antisense
GGATTTCGCTGTGTAGGGATTTGCA 539 509 25 Antisense
TTCGCTGTGTAGGGATTTGCACAAA 338 697 29 Antisense
AATTGGAAGTCCTGAAGATCGCGTT 452 179 65 Antisense
GAAGATCGCGTTGACAGCTGCATGG 662 337 78 Antisense
GACAGCTGCATGGGACAATCTAGAC 452 367 90 Antisense
GGGACAATCTAGACGCCAACTACCC 497 493 101 Antisense
TCGACTCACACCCGAAGGGACTTCG 262 595 137 Antisense
TCACACCCGAAGGGACTTCGGCCGT 705 591 142 Antisense
TCGGCCGTTATTAAATCAAAAGGAG 66 603 159 Antisense
Sequence Source Affymetrix Proprietary Database