[Home] | [Total List]

[172476_x_at]

Description R07E5.15 /REP_DB=WormBase Gene ID /WP=CE18126 /TR=O62342 /GB=CAA83628.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 97.2
(-1.4)
P 		81.4
(-2.3)
A 		69.2
(-3)
A 		172.2
(3)
P 		103
B 78
(-1.9)
P 		130
(3)
A 		72.9
(-2.4)
A 		66.7
(-3)
A 		63
C 74.7
(-2.8)
A 		99.3
(-2.3)
A 		64.7
(-3)
A 		351.7
(3)
P 		287
avr 83.3
(-2.3) 		103.6
(-1.4) 		68.9
(-3) 		196.9
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1792
1 2 3 4 5 6 range
A 42.9
(-3)
A 		59
(-2.9)
A 		97.8
(-2.8)
A 		193.8
(-2.5)
P 		815
(-0.4)
P 		1834.4
(3)
P 		1792
B 53
(-3)
M 		91.7
(-2.8)
A 		77.5
(-2.9)
A 		160.9
(-2.5)
P 		984.7
(0.9)
P 		1488.1
(3)
P 		1435
C 57.9
(-3)
A 		67
(-2.9)
A 		45.9
(-3)
A 		119.1
(-2.7)
P 		831.4
(-0.2)
P 		1732.9
(3)
P 		1687
avr 51.3
(-3) 		72.6
(-2.9) 		73.7
(-2.9) 		157.9
(-2.6) 		877
(0) 		1685.1
(3) 		1634
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 35.4
(3)
P 		17.7
(-3)
A 		18.1
(-2.9)
A 		25.2
(-0.5)
P 		18
B 24.9
(0.6)
P 		32.1
(3)
A 		16.9
(-2.1)
A 		14.2
(-3)
A 		18
C 24.7
(-2.6)
A 		28.5
(-2)
A 		22.5
(-3)
A 		59.3
(3)
P 		37
avr 28.3
(1) 		26.1
(0) 		19.2
(-3) 		32.9
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 572
1 2 3 4 5 6 range
A 7.9
(-3)
A 		21
(-2.8)
A 		21.3
(-2.8)
A 		49.1
(-2.4)
P 		245.9
(0.3)
P 		446.6
(3)
P 		439
B 18.4
(-3)
M 		30.5
(-2.9)
A 		18.8
(-3)
A 		42.6
(-2.7)
P 		400.1
(1.3)
P 		554.9
(3)
P 		537
C 21.5
(-2.9)
A 		20.5
(-2.9)
A 		11.7
(-3)
A 		24
(-2.9)
P 		269
(-0.3)
P 		580.1
(3)
P 		568
avr 15.9
(-3) 		24
(-2.9) 		17.3
(-3) 		38.6
(-2.7) 		305
(0.4) 		527.2
(3) 		511
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172476_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6891
Sequence Type Exemplar sequence
Representative Public ID R07E5.15 NCBI
Target Description R07E5.15 /REP_DB=WormBase Gene ID /WP=CE18126 /TR=O62342 /GB=CAA83628.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065488(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065488 NCBI Caenorhabditis elegans R07E5.15 (R07E5.15) mRNA, complete cds. 11/11 A 
GENEFINDER00000012860 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4398823:4402409:1 11/11 None
SNAP00000012847 ENSEMBL cdna:SNAP chromosome:CEL140:III:4398850:4402409:1 11/11 None
R07E5.15 ENSEMBL cdna:known chromosome:CEL140:III:4401427:4402419:1 gene:R07E5.15 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065549 3/11 Cross Hyb Matching Probes A 
NM_001027372 4/11 Cross Hyb Matching Probes None
SNAP00000012145 4/11 Cross Hyb Matching Probes None
GENEFINDER00000012157 4/11 Cross Hyb Matching Probes None
SNAP00000039543 3/11 Cross Hyb Matching Probes None
GENEFINDER00000039551 3/11 Cross Hyb Matching Probes None
T23F11.2 3/11 Cross Hyb Matching Probes A 
F17C8.7 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4401492-4402409(+) 100.0 100.0
chrIII:4736363-4737166(+) 94.36 94.36
chrIII:4654319-4655365(-) 95.8 95.8
Public Domain and Genome References
Gene Title
Ensembl R07E5.15
Entrez Gene 175570 Entrez gene
SwissProt O62342 EMBL-EBI
WormBase CE18126 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE45044 Hypothetical protein F17C8.7 [Caenorhabditis elegans] ref|NP_001022543.1| F17C8.7 [Caenorhabditis elegans] 1.0E-139
blast CAA83628 Hypothetical protein R07E5.15 [Caenorhabditis elegans] ref|NP_497889.1| R07E5.15 [Caenorhabditis elegans] 1.0E-132
blast CAA83629 Hypothetical protein R07E5.6 [Caenorhabditis elegans] ref|NP_497888.1| R07E5.6 [Caenorhabditis elegans] 1.0E-128
blast CAA86457 Hypothetical protein T23F11.2 [Caenorhabditis elegans] ref|NP_497950.1| T23F11.2 [Caenorhabditis elegans] 1.0E-127
blast CAA83628 Hypothetical protein R07E5.15 [Caenorhabditis elegans] ref|NP_497889.1| R07E5.15 [Caenorhabditis elegans] 1.0E-125
blast CAE45044 Hypothetical protein F17C8.7 [Caenorhabditis elegans] ref|NP_001022543.1| F17C8.7 [Caenorhabditis elegans] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:172476_X_AT
gtgtgaactcatcaaagctctctcaatgggacaagatgaatctttcgatcagaggatacg
tgttgccgatctatgcgaagagtctgaagcagttcattgatcagaaaaaaactgcaggaa
ctaaggagcaagaggcattctcattgtctgtcaagttcacggatcagttctcggctccgc
agacagtcatcaacttgccaggatatgccacgtgtatcgagtcgactgatcatccggttg
acgtggaagaattggacactacaactgcagtcaacatcgaaagagatgtctccactgctg
ctccaattggttcaatgatgggatttgttgatgagtacaaacgtcgtcaattgaacaaag
gatgctggttgtccaactacatctgtggaactgaaaagcaaccggagaagcagtcaatga
gatcttctcgtagatcaagccgttcgtcgaatcgttctgcaaagagctcaaaggcttgcc
gtgttcaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGAACTCATCAAAGCTCTCTCA 372 487 209 Antisense
AGAGGATACGTGTTGCCGATCTATG 252 69 259 Antisense
GAGGCATTCTCATTGTCTGTCAAGT 463 405 340 Antisense
CAAGTTCACGGATCAGTTCTCGGCT 340 185 360 Antisense
GCTCCGCAGACAGTCATCAACTTGC 395 299 382 Antisense
TATGCCACGTGTATCGAGTCGACTG 346 657 412 Antisense
GTCGACTGATCATCCGGTTGACGTG 623 473 429 Antisense
TCCACTGCTGCTCCAATTGGTTCAA 132 589 499 Antisense
GGATGCTGGTTGTCCAACTACATCT 255 511 568 Antisense
CAAGCCGTTCGTCGAATCGTTCTGC 240 187 644 Antisense
GCTCAAAGGCTTGCCGTGTTCAGGC 514 299 674 Antisense
Sequence Source Affymetrix Proprietary Database