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[172473_at]

Description F28F5.4 /REP_DB=WormBase Gene ID /WP=CE00791 /TR=Q19887 /GB=AAA50683.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 555
1 2 3 4 range
A 577.6
(3)
P 		438.6
(0.3)
A 		265.1
(-3)
A 		463.8
(0.8)
P 		313
B 609.9
(3)
P 		566.8
(2.3)
A 		254.9
(-3)
A 		279.6
(-2.6)
P 		355
C 774.3
(3)
P 		356.2
(-1.5)
A 		219
(-3)
A 		550.8
(0.6)
P 		555
avr 653.9
(3) 		453.9
(0.1) 		246.3
(-3) 		431.4
(-0.3) 		408

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 712
1 2 3 4 5 6 range
A 800.9
(3)
M 		380.2
(-1.1)
P 		401
(-0.9)
P 		247.6
(-2.5)
A 		357.6
(-1.4)
A 		192.2
(-3)
P 		609
B 533.2
(3)
P 		292.1
(-0.3)
M 		396.6
(1.2)
M 		225.7
(-1.2)
A 		268.5
(-0.6)
M 		89.4
(-3)
A 		444
C 490.2
(3)
P 		330.9
(0.5)
M 		313.3
(0.2)
M 		324.1
(0.4)
A 		206.4
(-1.4)
A 		106
(-3)
A 		384
avr 608.1
(3) 		334.4
(-0.4) 		370.3
(0) 		265.8
(-1.3) 		277.5
(-1.1) 		129.2
(-3) 		479
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 210.3
(3)
P 		95.2
(-1.8)
A 		69.3
(-2.9)
A 		67.9
(-3)
P 		142
B 194.5
(3)
P 		140
(0.6)
A 		59.1
(-3)
A 		59.6
(-3)
P 		135
C 256.3
(3)
P 		102.4
(-2.1)
A 		76.3
(-3)
A 		92.9
(-2.4)
P 		180
avr 220.4
(3) 		112.5
(-1.3) 		68.2
(-3) 		73.5
(-2.8) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 147.6
(3)
M 		135.2
(2.3)
P 		87.3
(-0.6)
P 		62.8
(-2)
A 		107.9
(0.6)
A 		46.8
(-3)
P 		101
B 185.5
(3)
P 		97.2
(-0.5)
M 		96.3
(-0.5)
M 		59.8
(-2)
A 		109.1
(-0)
M 		33.3
(-3)
A 		152
C 181.7
(3)
P 		101
(-0.3)
M 		79.7
(-1.2)
M 		65.2
(-1.8)
A 		66.8
(-1.7)
A 		35.5
(-3)
A 		146
avr 171.6
(3) 		111.1
(0.3) 		87.8
(-0.8) 		62.6
(-1.9) 		94.6
(-0.5) 		38.5
(-3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172473_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6551
Sequence Type Exemplar sequence
Representative Public ID F28F5.4 NCBI
Target Description F28F5.4 /REP_DB=WormBase Gene ID /WP=CE00791 /TR=Q19887 /GB=AAA50683.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000021160 ENSEMBL cdna:SNAP chromosome:CEL140:III:6816665:6816953:-1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6816629-6816801(-) 95.93 100.0
Sequence
Target Sequence 
>C. ELEGANS:172473_AT
atgcacaaaatccgatcccacagcaagtatattatcccccgcctcaacaaaattgtggaa
gaaggcgacgccgatgcggtcggttttgagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCACAAAATCCGATCCCACAGCA 26 45 13 Antisense
AAAATCCGATCCCACAGCAAGTATA 229 133 19 Antisense
ATCCGATCCCACAGCAAGTATATTA 620 37 22 Antisense
ATCCCACAGCAAGTATATTATCCCC 700 37 27 Antisense
CCCACAGCAAGTATATTATCCCCCG 593 257 29 Antisense
TCCCCCGCCTCAACAAAATTGTGGA 390 595 47 Antisense
CCCCGCCTCAACAAAATTGTGGAAG 528 261 49 Antisense
AATTGTGGAAGAAGGCGACGCCGAT 203 177 63 Antisense
AAGAAGGCGACGCCGATGCGGTCGG 98 151 71 Antisense
CGACGCCGATGCGGTCGGTTTTGAG 484 243 78 Antisense
CGCCGATGCGGTCGGTTTTGAGTTT 496 257 81 Antisense
Sequence Source Affymetrix Proprietary Database