[Home] | [Total List]

[172470_x_at]

Description F55A4.6 /REP_DB=WormBase Gene ID /WP=CE11109 /TR=Q94240 /GB=AAB07563.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 4.5
(-3)
A 		13.1
(-2)
A 		4.8
(-3)
A 		53.9
(3)
A 		49
B 15.9
(1.2)
A 		2.4
(-3)
A 		21.7
(3)
A 		20.5
(2.6)
A 		19
C 4.7
(-3)
A 		15
(-1.2)
A 		11.3
(-1.8)
A 		38.8
(3)
A 		34
avr 8.4
(-3) 		10.2
(-2.6) 		12.6
(-2.1) 		37.7
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 2
(-3)
A 		5.5
(-2.3)
A 		4
(-2.6)
A 		29.9
(2.4)
A 		33
(3)
A 		4.4
(-2.5)
A 		31
B 1.2
(-3)
A 		4.6
(-2.3)
A 		32
(3)
A 		24.1
(1.5)
A 		14.2
(-0.5)
A 		11
(-1.1)
A 		31
C 19.7
(1.2)
A 		18.3
(0.8)
A 		4.2
(-2.4)
A 		27.8
(3)
A 		2.6
(-2.7)
A 		1.4
(-3)
A 		26
avr 7.6
(-2.4) 		9.5
(-1.9) 		13.4
(-0.8) 		27.3
(3) 		16.6
(0) 		5.6
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.6
(-2.7)
A 		2.8
(-1.6)
A 		1.3
(-3)
A 		7.9
(3)
A 		7
B 5.1
(3)
A 		0.6
(-3)
A 		5
(2.9)
A 		4.4
(2.1)
A 		5
C 1.6
(-3)
A 		4.3
(0.3)
A 		4
(-0.1)
A 		6.5
(3)
A 		5
avr 2.8
(-2.7) 		2.6
(-3) 		3.4
(-1.7) 		6.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.9
(-2.1)
A 		0.9
(-2.7)
A 		7.6
(1.5)
A 		10
(3)
A 		1.1
(-2.6)
A 		10
B 0.4
(-3)
A 		1.5
(-2.1)
A 		7.8
(3)
A 		6.4
(1.9)
A 		5.8
(1.4)
A 		4.1
(0)
A 		7
C 7.3
(3)
A 		5.6
(1.5)
A 		1.1
(-2.5)
A 		5.6
(1.5)
A 		0.9
(-2.6)
A 		0.5
(-3)
A 		7
avr 2.7
(-2) 		3
(-1.6) 		3.3
(-1.2) 		6.5
(3) 		5.6
(1.8) 		1.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172470_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18402
Sequence Type Exemplar sequence
Representative Public ID F55A4.6 NCBI
Target Description F55A4.6 /REP_DB=WormBase Gene ID /WP=CE11109 /TR=Q94240 /GB=AAB07563.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075796 NCBI Caenorhabditis elegans F55A4.6 (F55A4.6) mRNA, complete cds. 11/11 None
F55A4.6 ENSEMBL cdna:known chromosome:CEL140:X:1031654:1033610:-1 gene:F55A4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059224 4/11 Cross Hyb Matching Probes A 
NM_062282 3/11 Cross Hyb Matching Probes A 
SNAP00000027217 3/11 Cross Hyb Matching Probes None
SNAP00000039513 3/11 Cross Hyb Matching Probes None
M01A10.4 4/11 Cross Hyb Matching Probes A 
C49D10.1 3/11 Cross Hyb Matching Probes A 
F22B8.8 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1031653-1033610(-) 13.24 100.0
Public Domain and Genome References
Ensembl F55A4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508197 F55A4.6 [Caenorhabditis elegans] 0.0
blast AAC71186 Hypothetical protein C49D10.1 [Caenorhabditis elegans] ref|NP_494683.1| C49D10.1 [Caenorhabditis elegans] 0.0
blast AAB42276 Hypothetical protein M01A10.4 [Caenorhabditis elegans] ref|NP_491625.1| M01A10.4 [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 3.8E-41
Sequence
Target Sequence 
>C. ELEGANS:172470_X_AT
agatccttcctcaatcaaaggacttcaagagtcaaagtaggaaacctgatttctcaagac
accctaaatgtcacttcaggagtgccccaaggaactgtagctggaccatcaatcctggaa
tatggttgcgagatttttcacccgtccactattgccctttcagataaactagagtcctca
cttcgcttcttttcacgtaaagtgtttcaaagatgtaatctgaaattctcatcctattat
gataggctttcccaatttgaattgaaaagcaccctccacagaagactccttatgattctt
aaaacattctataacattgtcacaaagtcatatcattttccatcattatttctctatgtt
aaatgttctcgttccaaaagatttccatatatgttgtattcaactggtataccaaataac
gggtttctacatgctaacttgtcattatggaaccacgtagctagactgttgcctgaaata
atgagtccatcggcttttgctgcgcgtattaattccatccccgtgacttatcccatccac
ttgacctttgactgttgccggtcaagatttggtcactttatctttttatctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATCCTTCCTCAATCAAAGGACTT 454 65 1123 Antisense
GAAACCTGATTTCTCAAGACACCCT 223 359 1163 Antisense
GACACCCTAAATGTCACTTCAGGAG 569 365 1180 Antisense
GTAGCTGGACCATCAATCCTGGAAT 112 457 1219 Antisense
ATGGTTGCGAGATTTTTCACCCGTC 100 51 1244 Antisense
TAAACTAGAGTCCTCACTTCGCTTC 468 639 1287 Antisense
ATCATTTTCCATCATTATTTCTCTA 362 31 1454 Antisense
GAACCACGTAGCTAGACTGTTGCCT 583 345 1572 Antisense
TAATGAGTCCATCGGCTTTTGCTGC 639 635 1601 Antisense
TTTGCTGCGCGTATTAATTCCATCC 500 667 1618 Antisense
TGGTCACTTTATCTTTTTATCTCAA 665 551 1692 Antisense
Sequence Source Affymetrix Proprietary Database