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[172467_x_at]

Description C34G6.3 /REP_DB=WormBase Gene ID /WP=CE08575 /TR=O01496 /GB=AAB52477.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 20
(1.7)
A 		3.1
(-2.5)
A 		1.1
(-3)
A 		25.1
(3)
A 		24
B 2.9
(-3)
A 		19.4
(3)
A 		4.2
(-2.5)
A 		10.4
(-0.3)
A 		17
C 13.3
(-0.8)
A 		30.3
(3)
A 		3.3
(-3)
A 		3.3
(-3)
A 		27
avr 12.1
(0.8) 		17.6
(3) 		2.9
(-3) 		12.9
(1.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 4.2
(-2.8)
A 		1
(-3)
A 		3.6
(-2.8)
A 		18.2
(-1.8)
A 		30.2
(-1)
A 		87
(3)
A 		86
B 11.9
(-2.5)
A 		2.5
(-3)
A 		3.3
(-3)
A 		24.9
(-1.7)
A 		55.3
(0.1)
A 		106.2
(3)
P 		104
C 2.5
(-3)
A 		30.7
(-1.6)
A 		11.4
(-2.5)
A 		8.4
(-2.7)
A 		31.6
(-1.5)
A 		119.3
(3)
P 		117
avr 6.2
(-3) 		11.4
(-2.7) 		6.1
(-3) 		17.2
(-2.3) 		39
(-1) 		104.2
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.3
(3)
A 		0.7
(-2.7)
A 		0.3
(-3)
A 		3.7
(-0.1)
A 		7
B 0.9
(-3)
A 		4.8
(3)
A 		1
(-2.8)
A 		2.2
(-1)
A 		4
C 4.4
(-0.2)
A 		8.7
(3)
A 		1.2
(-2.6)
A 		0.6
(-3)
A 		8
avr 4.2
(2.2) 		4.7
(3) 		0.8
(-3) 		2.2
(-0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		0.4
(-3)
A 		0.8
(-2.9)
A 		4.6
(-1.8)
A 		9.1
(-0.5)
A 		21.2
(3)
A 		21
B 4.1
(-2.5)
A 		0.8
(-3)
A 		0.8
(-3)
A 		6.6
(-2.1)
A 		22.5
(0.4)
A 		39.6
(3)
P 		39
C 0.9
(-3)
A 		9.4
(-1.7)
A 		2.9
(-2.7)
A 		1.7
(-2.9)
A 		10.2
(-1.6)
A 		39.9
(3)
P 		39
avr 1.9
(-2.9) 		3.5
(-2.6) 		1.5
(-3) 		4.3
(-2.5) 		13.9
(-0.7) 		33.6
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172467_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2333
Sequence Type Exemplar sequence
Representative Public ID C34G6.3 NCBI
Target Description C34G6.3 /REP_DB=WormBase Gene ID /WP=CE08575 /TR=O01496 /GB=AAB52477.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059307 NCBI Caenorhabditis elegans C34G6.3 (C34G6.3) mRNA, complete cds. 11/11 None
SNAP00000014376 ENSEMBL cdna:SNAP chromosome:CEL140:I:5905024:5905475:1 11/11 None
GENEFINDER00000014387 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5905024:5905475:1 11/11 None
C34G6.3 ENSEMBL cdna:known chromosome:CEL140:I:5905024:5905475:1 gene:C34G6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060205 2/11 Cross Hyb Matching Probes A 
SNAP00000002756 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002761 2/11 Cross Hyb Matching Probes None
Y67A6A.1 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5905023-5905475(+) 80.05 100.0
chrI:9837878-9838306(-) 90.71 90.71
Public Domain and Genome References
Gene Title
Ensembl C34G6.3
Entrez Gene 183218 Entrez gene
SwissProt O01496 EMBL-EBI
WormBase CE08575 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52477 Hypothetical protein C34G6.3 [Caenorhabditis elegans] ref|NP_491708.1| C34G6.3 [Caenorhabditis elegans] 3.0E-31
blast CAA21674 Hypothetical protein Y67A6A.1 [Caenorhabditis elegans] ref|NP_492606.1| Y67A6A.1 [Caenorhabditis elegans] 2.0E-27
blast CAE57484 Hypothetical protein CBG00453 [Caenorhabditis briggsae] 5.0E-14
Sequence
Target Sequence 
>C. ELEGANS:172467_X_AT
gaagaaagactgtgctgacaagaagaaaacttcgaaaacgaagaagaagacttcaaattt
gtcggtttcaagatcccaaacttctgtggatatgaatgagaaggacaaggcaaaggaggc
aaaggagttgaaagagaagaaggcaaaagaagaagccgagaagaaggttgttgccacacc
gaagaaagatgcctcgaaggatcatgcaaagaaggaggatgatcctaataagcaaaacga
gccaagtggaatggatgttcttgtgaaggaggacggcaagaagacaaagatggacgatgg
atacgaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAAGACTGTGCTGACAAGAAG 160 337 39 Antisense
GAAGACTTCAAATTTGTCGGTTTCA 556 337 84 Antisense
GTCGGTTTCAAGATCCCAAACTTCT 37 473 99 Antisense
AGATCCCAAACTTCTGTGGATATGA 81 67 109 Antisense
GCCGAGAAGAAGGTTGTTGCCACAC 325 285 193 Antisense
GTTGCCACACCGAAGAAAGATGCCT 523 439 208 Antisense
GAAAGATGCCTCGAAGGATCATGCA 78 361 222 Antisense
GATGCCTCGAAGGATCATGCAAAGA 140 415 226 Antisense
CGAGCCAAGTGGAATGGATGTTCTT 584 249 276 Antisense
GGATGTTCTTGTGAAGGAGGACGGC 228 513 291 Antisense
AAAGATGGACGATGGATACGAGGAT 414 121 324 Antisense
Sequence Source Affymetrix Proprietary Database