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[172466_x_at]

Description C40D2.1 /REP_DB=WormBase Gene ID /WP=CE19373 /TR=O76559 /GB=AAC26264.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 2.5
(-3)
A 		9.9
(-2.4)
A 		5.4
(-2.7)
A 		71.9
(3)
P 		69
B 40.2
(2.3)
A 		6.8
(-3)
A 		18.7
(-1.1)
A 		44.6
(3)
A 		38
C 13.9
(-1.9)
A 		3
(-2.9)
A 		1.8
(-3)
A 		66.2
(3)
A 		64
avr 18.9
(-1.6) 		6.6
(-3) 		8.6
(-2.8) 		60.9
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 28
(2.3)
A 		2
(-3)
A 		28.8
(2.4)
A 		31.6
(3)
A 		25.2
(1.7)
A 		8.3
(-1.7)
A 		30
B 2.8
(-3)
A 		3.5
(-2.8)
A 		24
(3)
A 		21.9
(2.4)
A 		17.1
(1)
A 		14.3
(0.3)
A 		21
C 18.8
(0.5)
A 		14.9
(-0.3)
A 		9.3
(-1.4)
A 		31.4
(3)
A 		1.2
(-3)
A 		15
(-0.3)
A 		30
avr 16.5
(-0.3) 		6.8
(-3) 		20.7
(0.9) 		28.3
(3) 		14.5
(-0.9) 		12.5
(-1.4) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.9
(-3)
A 		2.2
(-2.2)
A 		1.4
(-2.7)
A 		10.5
(3)
P 		10
B 12.8
(3)
A 		1.7
(-3)
A 		4.3
(-1.6)
A 		9.5
(1.2)
A 		11
C 4.6
(-0.7)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		11.2
(3)
A 		11
avr 6.1
(0.1) 		1.6
(-3) 		2.1
(-2.7) 		10.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 5.2
(0.7)
A 		0.7
(-3)
A 		6.3
(1.6)
A 		8
(3)
A 		7.6
(2.7)
A 		2
(-1.9)
A 		7
B 1
(-3)
A 		1.2
(-2.8)
A 		5.8
(1.9)
A 		5.8
(1.9)
A 		6.9
(3)
A 		5.3
(1.4)
A 		6
C 7
(3)
A 		4.6
(0.8)
A 		2.4
(-1.2)
A 		6.3
(2.4)
A 		0.4
(-3)
A 		5
(1.2)
A 		7
avr 4.4
(-0.1) 		2.2
(-3) 		4.8
(0.5) 		6.7
(3) 		5
(0.7) 		4.1
(-0.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172466_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4578
Sequence Type Exemplar sequence
Representative Public ID C40D2.1 NCBI
Target Description C40D2.1 /REP_DB=WormBase Gene ID /WP=CE19373 /TR=O76559 /GB=AAC26264.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061746(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061746 NCBI Caenorhabditis elegans C40D2.1 (C40D2.1) mRNA, complete cds. 11/11 None
C40D2.1 ENSEMBL cdna:known chromosome:CEL140:II:1998862:1999659:1 gene:C40D2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061716 1/11 Cross Hyb Matching Probes A 
NM_061715 1/11 Cross Hyb Matching Probes A 
NM_061710 1/11 Cross Hyb Matching Probes A 
NM_061738 7/11 Cross Hyb Matching Probes A 
NM_061745 3/11 Cross Hyb Matching Probes A 
NM_061737 3/11 Cross Hyb Matching Probes A 
SNAP00000002419 2/11 Cross Hyb Matching Probes None
SNAP00000005798 1/11 Cross Hyb Matching Probes None
SNAP00000005799 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005801 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005804 1/11 Cross Hyb Matching Probes None
SNAP00000013030 3/11 Cross Hyb Matching Probes None
SNAP00000013031 3/11 Cross Hyb Matching Probes None
GENEFINDER00000013039 3/11 Cross Hyb Matching Probes None
GENEFINDER00000013042 6/11 Cross Hyb Matching Probes None
SNAP00000024877 3/11 Cross Hyb Matching Probes None
SNAP00000024878 7/11 Cross Hyb Matching Probes None
GENEFINDER00000024883 3/11 Cross Hyb Matching Probes None
SNAP00000026907 1/11 Cross Hyb Matching Probes None
SNAP00000026908 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026918 1/11 Cross Hyb Matching Probes None
C16C4.13 1/11 Cross Hyb Matching Probes A 
C46F9.3 1/11 Cross Hyb Matching Probes A 
C46F9.2 1/11 Cross Hyb Matching Probes A 
ZK250.7 3/11 Cross Hyb Matching Probes A 
ZK250.8 7/11 Cross Hyb Matching Probes A 
C40D2.2.2 3/11 Cross Hyb Matching Probes None
C40D2.2.1 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1998860-1999658(+) 99.68 100.0
chrII:1890694-1957890(-) 96.17 96.17
Public Domain and Genome References
Gene Title
Ensembl C40D2.1
Entrez Gene 183362 Entrez gene
SwissProt O76559 EMBL-EBI
WormBase CE19373 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26264 Hypothetical protein C40D2.1 [Caenorhabditis elegans] ref|NP_494147.1| C40D2.1 [Caenorhabditis elegans] 1.0E-121
blast AAB71077 Hypothetical protein ZK250.8 [Caenorhabditis elegans] ref|NP_494139.1| ZK250.8 [Caenorhabditis elegans] 1.0E-100
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 6.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.3E-41
Pfam IPR002083 EMBL-EBI MATH 1.4E-15
Sequence
Target Sequence 
>C. ELEGANS:172466_X_AT
gacgagcagatctttcttgctaactcatatcttcaaggatgtatcaaaactcgacgaagg
aggcagttactacagtgatattgaaatacgacatgatatttcatggaaaatccgtatttt
caagaaagaagagtttcttggtgtaaatctgcactgtgaaaaggaggaatgctttggaga
gagaaagtggtcgtttcaaacgaaattcacgatgaaactagtagctgtcagtgagaagtt
tttccgacggactgttcaatatgaattccaaaagccggaaggtcatggaatgaataaatt
cattagttgggagaatatgctgagagattatgtggataatgatagtattatcattgaaat
ccatgccgatattgttagcagtgcgggtttctttaaaatcaaatatcttcctaatttgca
accaaatttcaataattcatttgtgcttaaacatactttcaagaacatttcgagatttgt
agagtttgaaaaagattatagtgatttagaagagcatttcaatattccatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAGCAGATCTTTCTTGCTAACT 331 379 15 Antisense
TCTTTCTTGCTAACTCATATCTTCA 639 615 25 Antisense
GGATGTATCAAAACTCGACGAAGGA 30 515 51 Antisense
CGACGAAGGAGGCAGTTACTACAGT 67 249 66 Antisense
GTTTCTTGGTGTAAATCTGCACTGT 87 451 147 Antisense
GCTGTCAGTGAGAAGTTTTTCCGAC 307 293 238 Antisense
TTTTCCGACGGACTGTTCAATATGA 429 675 254 Antisense
GAAATCCATGCCGATATTGTTAGCA 454 361 370 Antisense
TGTTAGCAGTGCGGGTTTCTTTAAA 676 557 387 Antisense
AATATCTTCCTAATTTGCAACCAAA 675 173 416 Antisense
GAAGAGCATTTCAATATTCCATGGA 349 339 523 Antisense
Sequence Source Affymetrix Proprietary Database