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[172465_x_at]

Description C12D12.6 /REP_DB=WormBase Gene ID /WP=CE06818 /TR=Q17923 /GB=AAA96082.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 12      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 106.5
(-2.3)
A 		139.4
(-1.3)
A 		86
(-3)
A 		271.3
(3)
A 		185
B 179.6
(3)
A 		110.2
(-1.1)
A 		78
(-3)
A 		139.6
(0.6)
A 		102
C 107.7
(-2.2)
A 		98.7
(-3)
A 		111.4
(-1.9)
A 		168.2
(3)
A 		70
avr 131.3
(-0.7) 		116.1
(-1.6) 		91.8
(-3) 		193
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 87.1
(0.9)
A 		91.8
(1.2)
A 		119.4
(3)
P 		91.5
(1.2)
A 		102.4
(1.9)
A 		28.5
(-3)
A 		91
B 73.8
(1.5)
A 		95.7
(3)
A 		77.5
(1.7)
A 		55
(0.2)
A 		44.4
(-0.6)
A 		9.7
(-3)
A 		86
C 84.7
(0.3)
A 		138.4
(3)
A 		111.3
(1.6)
A 		64.7
(-0.7)
A 		47.3
(-1.6)
A 		19.4
(-3)
A 		119
avr 81.9
(1.2) 		108.6
(3) 		102.7
(2.6) 		70.4
(0.4) 		64.7
(0.1) 		19.2
(-3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 38.8
(2.7)
A 		30.3
(-0.3)
A 		22.5
(-3)
A 		39.7
(3)
A 		17
B 57.3
(3)
A 		27.2
(-1.6)
A 		18.1
(-3)
A 		29.8
(-1.2)
A 		39
C 35.7
(1.2)
A 		28.4
(-3)
A 		38.8
(3)
A 		28.4
(-3)
A 		10
avr 43.9
(3) 		28.6
(-2.3) 		26.5
(-3) 		32.6
(-0.9) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 16.1
(-0.9)
A 		32.7
(3)
A 		26
(1.4)
P 		23.2
(0.8)
A 		30.9
(2.6)
A 		6.9
(-3)
A 		26
B 25.7
(1.7)
A 		31.8
(3)
A 		18.8
(0.2)
A 		14.6
(-0.7)
A 		18
(0.1)
A 		3.6
(-3)
A 		28
C 31.4
(1.2)
A 		42.2
(3)
A 		28.3
(0.7)
A 		13
(-1.9)
A 		15.3
(-1.5)
A 		6.5
(-3)
A 		36
avr 24.4
(0.8) 		35.6
(3) 		24.4
(0.8) 		16.9
(-0.8) 		21.4
(0.2) 		5.7
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172465_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18149
Sequence Type Exemplar sequence
Representative Public ID C12D12.6 NCBI
Target Description C12D12.6 /REP_DB=WormBase Gene ID /WP=CE06818 /TR=Q17923 /GB=AAA96082.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076204 NCBI Caenorhabditis elegans C12D12.6 (C12D12.6) mRNA, complete cds. 11/11 A 
SNAP00000040499 ENSEMBL cdna:SNAP chromosome:CEL140:X:3514813:3515817:-1 9/11 None
GENEFINDER00000040500 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3514813:3515619:-1 9/11 None
C12D12.6 ENSEMBL cdna:known chromosome:CEL140:X:3514429:3515722:-1 gene:C12D12.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068671 7/11 Cross Hyb Matching Probes A 
NM_058700 2/11 Cross Hyb Matching Probes A 
NM_070965 1/11 Cross Hyb Matching Probes A 
NM_001027290 7/11 Cross Hyb Matching Probes None
SNAP00000031641 6/11 Cross Hyb Matching Probes None
GENEFINDER00000031644 6/11 Cross Hyb Matching Probes None
SNAP00000038114 3/11 Cross Hyb Matching Probes None
SNAP00000040246 7/11 Cross Hyb Matching Probes None
SNAP00000002696 7/11 Cross Hyb Matching Probes None
GENEFINDER00000002700 4/11 Cross Hyb Matching Probes None
SNAP00000032774 3/11 Cross Hyb Matching Probes None
M01B12.1 2/11 Cross Hyb Matching Probes A 
H31G24.2 6/11 Cross Hyb Matching Probes A 
T05F1.11 7/11 Cross Hyb Matching Probes None
Y52E8A.6 7/11 Cross Hyb Matching Probes A 
B0478.2 7/11 Cross Hyb Matching Probes A 
R09A1.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3514429-3515723(-) 19.51 100.0
Public Domain and Genome References
Ensembl C12D12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508605 C12D12.6 [Caenorhabditis elegans] 1.0E-152
blast NP_501072 B0478.2 [Caenorhabditis elegans] 1.0E-142
blast T24544 hypothetical protein T05F1.12 - Caenorhabditis elegans 1.0E-132
blast AAP13750 Hypothetical protein Y52E8A.6 [Caenorhabditis elegans] ref|NP_001022461.1| Y52E8A.6 [Caenorhabditis elegans] 1.0E-131
blast AAP13750 Hypothetical protein Y52E8A.6 [Caenorhabditis elegans] ref|NP_001022461.1| Y52E8A.6 [Caenorhabditis elegans] 1.0E-130
blast NP_501072 B0478.2 [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 4.6E-19
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 4.6E-19
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 4.6E-19
Sequence
Target Sequence 
>C. ELEGANS:172465_X_AT
gaccttggaatcttcgtcgacgacaagctgaacttccagaagcacataaacatcatttcg
aacttagcccttctcaaatgccggcagttacttcgatccttccgctcaaaaaatgccagc
ctttacttcaaattgtacaatatctatgtgcagccaatattaaattacggatgtgaaatc
tacaacccgatctctaaaaatctgattaaacaactggagtctccactgaagtttttctcg
agaagagtcttccaacgctgcaatctatcatactcatcatatgaaaaccgtctagctcag
ctgaaccaaaagtcagttcaacacctgcggattcttcaaatattgaggacctatcacaac
atcctgtctggatcattcaaattattcaagtttgtttctcccgtaactgtccaacaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCTTGGAATCTTCGTCGACGACA 469 377 349 Antisense
AACTTAGCCCTTCTCAAATGCCGGC 398 137 409 Antisense
CAAATGCCGGCAGTTACTTCGATCC 700 191 423 Antisense
AATGCCAGCCTTTACTTCAAATTGT 23 167 460 Antisense
GTGAAATCTACAACCCGATCTCTAA 281 481 521 Antisense
GAGTCTCCACTGAAGTTTTTCTCGA 54 401 565 Antisense
AACGCTGCAATCTATCATACTCATC 538 145 602 Antisense
GAAAACCGTCTAGCTCAGCTGAACC 55 355 631 Antisense
AGTTCAACACCTGCGGATTCTTCAA 176 63 663 Antisense
GACCTATCACAACATCCTGTCTGGA 530 383 696 Antisense
TTCTCCCGTAACTGTCCAACAAATT 167 669 744 Antisense
Sequence Source Affymetrix Proprietary Database