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[172463_x_at]

Description Y17G7B.2C /REP_DB=WormBase Gene ID /WP=CE21379 /TR=Q9XXH3 /GB=CAA19469.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_high_8_8 > 56      6grp_highest_nonorm > 82      6grp_total > 38      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 402.2
(3)
P 		206.5
(-3)
P 		273.2
(-1)
P 		225.4
(-2.4)
A 		196
B 329.3
(2.4)
P 		279.7
(0.8)
P 		347.7
(3)
M 		164.2
(-3)
P 		184
C 345.7
(1.2)
P 		371.5
(3)
M 		361.8
(2.3)
P 		283.7
(-3)
P 		88
avr 359.1
(3) 		285.9
(-0.3) 		327.6
(1.6) 		224.4
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 373.9
(1.1)
P 		405
(2)
P 		283.5
(-1.5)
P 		231.3
(-3)
P 		336.1
(0)
P 		438.7
(3)
P 		207
B 379.5
(0.9)
P 		419.4
(2)
P 		232.7
(-3)
P 		338.7
(-0.2)
P 		302
(-1.2)
P 		458.9
(3)
P 		226
C 654.6
(3)
P 		388.3
(-1.2)
P 		310.8
(-2.4)
P 		272.1
(-3)
P 		346.1
(-1.8)
P 		410.1
(-0.8)
P 		383
avr 469.3
(3) 		404.2
(1) 		275.7
(-3) 		280.7
(-2.8) 		328.1
(-1.4) 		435.9
(2) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 146.4
(3)
P 		44.8
(-2.4)
P 		71.4
(-1)
P 		33
(-3)
A 		113
B 105
(3)
P 		69.1
(-0.1)
P 		80.6
(0.9)
M 		35
(-3)
P 		70
C 114.4
(2.1)
P 		106.8
(1.5)
M 		126.1
(3)
P 		47.8
(-3)
P 		78
avr 121.9
(3) 		73.6
(-0.5) 		92.7
(0.9) 		38.6
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 68.9
(-2.3)
P 		144
(3)
P 		61.7
(-2.8)
P 		58.7
(-3)
P 		101.4
(0)
P 		106.8
(0.4)
P 		85
B 132
(1)
P 		139.6
(1.4)
P 		56.5
(-3)
P 		89.7
(-1.3)
P 		122.7
(0.5)
P 		171.1
(3)
P 		115
C 242.6
(3)
P 		118.5
(-1)
P 		79.1
(-2.2)
P 		54.7
(-3)
P 		112
(-1.2)
P 		137.3
(-0.4)
P 		188
avr 147.8
(3) 		134
(2) 		65.8
(-3) 		67.7
(-2.9) 		112
(0.4) 		138.4
(2.3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172463_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3367
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.2C NCBI
Target Description Y17G7B.2C /REP_DB=WormBase Gene ID /WP=CE21379 /TR=Q9XXH3 /GB=CAA19469.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064152(9), NM_064153(11), NM_064154(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064152 NCBI Caenorhabditis elegans Y17G7B.2b (Y17G7B.2) mRNA, complete cds. 9/11 A 
NM_064153 NCBI Caenorhabditis elegans Y17G7B.2c (Y17G7B.2) mRNA, complete cds. 11/11 A 
NM_064154 NCBI Caenorhabditis elegans Y17G7B.2a (Y17G7B.2) mRNA, complete cds. 9/11 A 
SNAP00000030317 ENSEMBL cdna:SNAP chromosome:CEL140:II:11980378:12001314:1 9/11 None
GENEFINDER00000030400 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11980378:11988602:1 9/11 None
Y17G7B.2b ENSEMBL cdna:known chromosome:CEL140:II:11980329:11988764:1 gene:Y17G7B.2 9/11 A 
Y17G7B.2a ENSEMBL cdna:known chromosome:CEL140:II:11980378:11988353:1 gene:Y17G7B.2 9/11 A 
Y17G7B.2c ENSEMBL cdna:known chromosome:CEL140:II:11980378:11988353:1 gene:Y17G7B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11980374-11988350(+) 95.54 100.0
Public Domain and Genome References
Ensembl Y17G7B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19468 Hypothetical protein Y17G7B.2b [Caenorhabditis elegans] ref|NP_496553.1| Y17G7B.2b [Caenorhabditis elegans] 0.0
blast CAA19449 Hypothetical protein Y17G7B.2a [Caenorhabditis elegans] ref|NP_496555.1| Y17G7B.2a [Caenorhabditis elegans] 0.0
blast CAE73557 Hypothetical protein CBG21026 [Caenorhabditis briggsae] 0.0
blast CAA19469 Hypothetical protein Y17G7B.2c [Caenorhabditis elegans] ref|NP_496554.1| Y17G7B.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 2.8E-15
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.6E-11
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.6E-11
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 2.8E-15
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 7.6E-11
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 4.6E-28
Pfam IPR002773 EMBL-EBI Deoxyhypusine synthase 1.0E-126
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 3.3E-7
Sequence
Target Sequence 
>C. ELEGANS:172463_X_AT
tttctcgctttttcgttgttctacattgaaattttccaaggcgacgttctcggctgtcta
atccatcttccagtggacaaaaaactgcagattccggcaaatttgccatcggaaaagtat
cttccagtatcacacaaaggcttcaatttgatatcatttaaagcgaattatttctttgaa
gtccaagaggagtccgcagatattgcaaagactctggtggaaatgcctggaagctatatc
gagttcttccacaatggaaaatcgtgcggaaaagcatatgagaatatctacgccggcgcc
tattacccgtcgatttccatatttaaatctgccacagccaccatgaatctcggccctaaa
ttccgtaatctgccacgtggtgccaccggaatccacgcgagagccgacgagcagcaacac
gaacaaactctttcggatatgctgtatttggtgtcaaaagaagtgaatttggaccatccg
ccgcgtgtaaaacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTCGCTTTTTCGTTGTTCTACA 397 671 853 Antisense
GAAATTTTCCAAGGCGACGTTCTCG 192 359 880 Antisense
CTGTCTAATCCATCTTCCAGTGGAC 587 237 906 Antisense
AAAGTATCTTCCAGTATCACACAAA 129 123 966 Antisense
GCTATATCGAGTTCTTCCACAATGG 494 303 1085 Antisense
TATTACCCGTCGATTTCCATATTTA 194 663 1153 Antisense
TTAAATCTGCCACAGCCACCATGAA 64 685 1175 Antisense
ATGAATCTCGGCCCTAAATTCCGTA 536 43 1195 Antisense
AAATTCCGTAATCTGCCACGTGGTG 360 113 1210 Antisense
AGCCGACGAGCAGCAACACGAACAA 639 83 1254 Antisense
GACCATCCGCCGCGTGTAAAACGAG 83 317 1324 Antisense
Sequence Source Affymetrix Proprietary Database