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[172462_x_at]

Description F07C6.4A /REP_DB=WormBase Gene ID /WP=CE20653 /TR=P90929 /GB=CAB03206.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 39      4grp_high_8_8 > 20      6grp_highest_nonorm > 82      6grp_total > 38      4grp_total > 20      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 318.6
(-0.6)
P 		258
(-2.7)
P 		248.2
(-3)
P 		425.1
(3)
P 		177
B 335.6
(0.9)
P 		308.6
(-0)
P 		217.8
(-3)
P 		400.9
(3)
P 		183
C 292.2
(-2.6)
P 		348.3
(-0.7)
P 		280.4
(-3)
P 		454.9
(3)
P 		175
avr 315.5
(-0.8) 		305
(-1.1) 		248.8
(-3) 		427
(3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 498.7
(3)
P 		393.2
(0.8)
P 		206
(-3)
P 		219.1
(-2.7)
P 		289.4
(-1.3)
P 		452.4
(2.1)
P 		293
B 495.9
(2.8)
P 		334.3
(-0.5)
P 		212
(-3)
P 		299.3
(-1.2)
P 		295.5
(-1.3)
P 		503.5
(3)
P 		292
C 459.7
(3)
P 		368.9
(0.8)
P 		216.5
(-3)
P 		270.8
(-1.7)
P 		300
(-0.9)
P 		433.2
(2.3)
P 		243
avr 484.8
(3) 		365.5
(0.4) 		211.5
(-3) 		263.1
(-1.9) 		295
(-1.2) 		463
(2.5) 		273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 116
(3)
P 		56
(-3)
P 		64.9
(-2.1)
P 		62.2
(-2.4)
P 		60
B 107
(3)
P 		76.2
(-0.3)
P 		50.5
(-3)
P 		85.4
(0.7)
P 		57
C 96.7
(2.1)
P 		100.1
(3)
P 		97.7
(2.4)
P 		76.7
(-3)
P 		23
avr 106.6
(3) 		77.4
(-1.9) 		71
(-3) 		74.8
(-2.4) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 91.9
(-0)
P 		139.8
(3)
P 		44.9
(-3)
P 		55.6
(-2.3)
P 		87.3
(-0.3)
P 		110.1
(1.1)
P 		95
B 172.5
(2.3)
P 		111.3
(-0.4)
P 		51.5
(-3)
P 		79.3
(-1.8)
P 		120
(0)
P 		187.7
(3)
P 		136
C 170.4
(3)
P 		112.6
(0)
P 		55.1
(-3)
P 		54.5
(-3)
P 		97.1
(-0.8)
P 		145
(1.7)
P 		116
avr 144.9
(2.8) 		121.2
(1.4) 		50.5
(-3) 		63.1
(-2.2) 		101.5
(0.2) 		147.6
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172462_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9823
Sequence Type Exemplar sequence
Representative Public ID F07C6.4A NCBI
Target Description F07C6.4A /REP_DB=WormBase Gene ID /WP=CE20653 /TR=P90929 /GB=CAB03206.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070040(11), NM_070041(10), NM_070042(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070040 NCBI Caenorhabditis elegans F07C6.4a (F07C6.4) mRNA, complete cds. 11/11 None
NM_070041 NCBI Caenorhabditis elegans F07C6.4b (F07C6.4) mRNA, complete cds. 10/11 A 
NM_070042 NCBI Caenorhabditis elegans F07C6.4c (F07C6.4) mRNA, complete cds. 10/11 None
SNAP00000031732 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12823630:12829579:1 10/11 None
GENEFINDER00000031742 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12825371:12829579:1 10/11 None
F07C6.4a ENSEMBL cdna:known chromosome:CEL140:IV:12805901:12826854:1 gene:F07C6.4 11/11 None
F07C6.4b.1 ENSEMBL cdna:known chromosome:CEL140:IV:12817031:12830191:1 gene:F07C6.4 10/11 None
F07C6.4b.2 ENSEMBL cdna:known chromosome:CEL140:IV:12817339:12830070:1 gene:F07C6.4 10/11 None
F07C6.4c ENSEMBL cdna:known chromosome:CEL140:IV:12817339:12826829:1 gene:F07C6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12805947-12826835(+) 100.0 100.0
Public Domain and Genome References
Ensembl F07C6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03206 Hypothetical protein F07C6.4a [Caenorhabditis elegans] emb|CAA93487.1| Hypothetical protein F07C6.4a [Caenorhabditis elegans] ref|NP_502441.1| F07C6.4a [Caenorhabditis elegans] 0.0
blast CAE74555 Hypothetical protein CBG22314 [Caenorhabditis briggsae] 0.0
blast CAB03204 Hypothetical protein F07C6.4b [Caenorhabditis elegans] emb|CAA93486.2| Hypothetical protein F07C6.4b [Caenorhabditis elegans] ref|NP_502442.2| F07C6.4b [Caenorhabditis elegans] 0.0
blast CAB03207 Hypothetical protein F07C6.4c [Caenorhabditis elegans] emb|CAA93488.2| Hypothetical protein F07C6.4c [Caenorhabditis elegans] ref|NP_502443.2| F07C6.4c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172462_X_AT
gaaggatcttcaagcagcacggctccggctcaatcggctcgagcagggacttcaacaaat
gagacattcggcgagtaaaccggatattagtagccttacaagtgatagtagcaactcctg
gacagcatccaactcgagtggaccgatgctcacgatggcgatgacgaagagctgccctac
gacgccacgtggatcggtgccagatttgagaaatggcttggacgatgagaaagacgaatt
tgatgaaaatgttgaagatcgtgtgtccaggagggctccgagtgcaatatcccgtcactc
cctatcccaacgatattctggagtttcctcttcctccacaagttccggatctgattctat
gggacttgggcttccaccacgtccaacatctcgaaaatcacagcaacaacagacgacacc
gttcgatgatcaactcgacaatccgatgatctgcgagattccaccaccaccatcttctgc
cgccgcccatccactgttagtaaccaacctgttgtcacgtggcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGATCTTCAAGCAGCACGGCTC 318 335 1380 Antisense
AATCGGCTCGAGCAGGGACTTCAAC 539 169 1411 Antisense
TAGCAACTCCTGGACAGCATCCAAC 294 651 1488 Antisense
AACTCGAGTGGACCGATGCTCACGA 619 139 1510 Antisense
GCCACGTGGATCGGTGCCAGATTTG 227 279 1563 Antisense
AAGATCGTGTGTCCAGGAGGGCTCC 412 155 1634 Antisense
CGATATTCTGGAGTTTCCTCTTCCT 151 249 1690 Antisense
TTCCTCCACAAGTTCCGGATCTGAT 26 701 1710 Antisense
GATTCTATGGGACTTGGGCTTCCAC 646 427 1732 Antisense
GACGACACCGTTCGATGATCAACTC 239 379 1791 Antisense
AACCAACCTGTTGTCACGTGGCAAG 589 133 1881 Antisense
Sequence Source Affymetrix Proprietary Database