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[172461_x_at]

Description K09C4.2 /REP_DB=WormBase Gene ID /WP=CE04730 /TR=Q21384 /GB=AAA83626.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 02      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 2
(-1.8)
A 		2.1
(-1.2)
A 		1.8
(-3)
A 		2.8
(3)
A 		1
B 1.8
(-2.8)
A 		3.3
(-2.2)
A 		1.2
(-3)
A 		17.8
(3)
A 		17
C 2.8
(-2.8)
A 		2.5
(-2.9)
A 		1.6
(-3)
A 		43.6
(3)
A 		42
avr 2.2
(-2.8) 		2.6
(-2.7) 		1.5
(-3) 		21.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-2.5)
A 		1.6
(-2.1)
A 		4.8
(3)
A 		1
(-3)
A 		2.7
(-0.3)
A 		1.4
(-2.4)
A 		4
B 1.1
(-3)
A 		1.7
(-2.7)
A 		2.1
(-2.5)
A 		1.8
(-2.7)
A 		2
(-2.6)
A 		13.2
(3)
A 		12
C 2.4
(-1.5)
A 		2.1
(-1.9)
A 		6
(2.5)
A 		3.6
(-0.2)
A 		6.4
(3)
A 		1.1
(-3)
A 		5
avr 1.6
(-3) 		1.8
(-2.7) 		4.3
(1.5) 		2.1
(-2.2) 		3.7
(0.5) 		5.2
(3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.7
(3)
A 		0.5
(-1)
A 		0.5
(-1)
A 		0.4
(-3)
A 		0
B 0.6
(-2.5)
A 		0.8
(-2.1)
A 		0.3
(-3)
A 		3.8
(3)
A 		4
C 0.9
(-2.7)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		7.4
(3)
A 		7
avr 0.7
(-2.6) 		0.7
(-2.6) 		0.5
(-3) 		3.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.6
(-0)
A 		1
(3)
A 		0.3
(-2.3)
A 		0.8
(1.5)
A 		0.3
(-2.3)
A 		1
B 0.4
(-3)
A 		0.6
(-2.7)
A 		0.5
(-2.9)
A 		0.5
(-2.9)
A 		0.8
(-2.5)
A 		4.9
(3)
A 		5
C 0.9
(-1.2)
A 		0.6
(-2.3)
A 		1.5
(0.9)
A 		0.7
(-1.9)
A 		2.1
(3)
A 		0.4
(-3)
A 		2
avr 0.5
(-3) 		0.6
(-2.6) 		1
(-0.9) 		0.5
(-3) 		1.2
(-0) 		1.9
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172461_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18416
Sequence Type Exemplar sequence
Representative Public ID K09C4.2 NCBI
Target Description K09C4.2 /REP_DB=WormBase Gene ID /WP=CE04730 /TR=Q21384 /GB=AAA83626.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076167 NCBI Caenorhabditis elegans K09C4.2 (K09C4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000004470 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3296304:3298020:1 10/11 None
K09C4.2 ENSEMBL cdna:known chromosome:CEL140:X:3297645:3298020:1 gene:K09C4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3297645-3298021(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09C4.2
Entrez Gene 187193 Entrez gene
SwissProt Q21384 EMBL-EBI
WormBase CE04730 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83627 Hypothetical protein K09C4.1 [Caenorhabditis elegans] ref|NP_508569.1| K09C4.1 [Caenorhabditis elegans] 7.0E-35
blast NP_508570 F11D5.5 [Caenorhabditis elegans] 3.0E-32
blast AAF99904 Hypothetical protein F11D5.5 [Caenorhabditis elegans] 3.0E-32
blast AAA83626 Hypothetical protein K09C4.2 [Caenorhabditis elegans] ref|NP_508568.1| K09C4.2 [Caenorhabditis elegans] 2.0E-26
blast NP_508570 F11D5.5 [Caenorhabditis elegans] 8.0E-14
blast AAF99904 Hypothetical protein F11D5.5 [Caenorhabditis elegans] 8.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000004470 2 69-91,96-118
Sequence
Target Sequence 
>C. ELEGANS:172461_X_AT
atggctggattaaggtatatgccagaaacacgtgggcgcgctgtgtacgacatcattgaa
tccatggataaggacgtggcttccagggcggtttctatcgacgaagagaatacaccgctg
attaaaaatcgtgcaatgacttttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTGGATTAAGGTATATGCCAG 59 53 13 Antisense
ATATGCCAGAAACACGTGGGCGCGC 640 17 29 Antisense
AGAAACACGTGGGCGCGCTGTGTAC 253 73 36 Antisense
CGCGCTGTGTACGACATCATTGAAT 506 255 49 Antisense
GTACGACATCATTGAATCCATGGAT 189 459 57 Antisense
TGGATAAGGACGTGGCTTCCAGGGC 392 551 77 Antisense
CAGGGCGGTTTCTATCGACGAAGAG 419 205 96 Antisense
TCGACGAAGAGAATACACCGCTGAT 62 603 110 Antisense
GAGAATACACCGCTGATTAAAAATC 177 391 118 Antisense
TACACCGCTGATTAAAAATCGTGCA 576 641 123 Antisense
TAAAAATCGTGCAATGACTTTTGAT 126 641 135 Antisense
Sequence Source Affymetrix Proprietary Database