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[172459_at]

Description C16E9.5 /REP_DB=WormBase Gene ID /WP=CE04019 /TR=Q18050 /GB=AAC47959.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 18.8
(-2.9)
A 		18.2
(-3)
A 		34.2
(-0.7)
A 		60
(3)
A 		42
B 31.5
(3)
A 		21.5
(0.5)
A 		27.8
(2.1)
A 		7.2
(-3)
A 		24
C 10.4
(-2.8)
A 		9.8
(-3)
A 		16.8
(-0.8)
A 		29.1
(3)
A 		19
avr 20.2
(-1.6) 		16.5
(-3) 		26.3
(0.8) 		32.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 9.2
(-1.8)
A 		14.1
(-1)
A 		18.5
(-0.2)
A 		36.8
(3)
A 		2.5
(-3)
A 		6.7
(-2.3)
A 		34
B 26.4
(2.9)
A 		21.7
(1.8)
A 		26.8
(3)
A 		3.9
(-2.5)
A 		1.9
(-3)
A 		2.7
(-2.8)
A 		25
C 3.5
(-3)
A 		22.9
(1.8)
A 		5.3
(-2.6)
A 		9.4
(-1.5)
A 		27.8
(3)
A 		25.4
(2.4)
A 		24
avr 13
(-1.4) 		19.6
(3) 		16.9
(1.2) 		16.7
(1) 		10.7
(-3) 		11.6
(-2.4) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.9
(0.6)
A 		3.9
(-3)
A 		8.9
(3)
A 		8.8
(2.9)
A 		5
B 10.1
(3)
A 		5.3
(-0.3)
A 		6.4
(0.4)
A 		1.5
(-3)
A 		9
C 3.5
(-1.6)
A 		2.8
(-3)
A 		5.9
(3)
A 		4.9
(1.1)
A 		3
avr 6.8
(2.4) 		4
(-3) 		7.1
(3) 		5.1
(-0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.7
(-2.4)
A 		5
(-0)
A 		4
(-0.7)
A 		9.3
(3)
A 		0.8
(-3)
A 		1.6
(-2.4)
A 		9
B 9.2
(3)
A 		7.2
(1.6)
A 		6.5
(1.1)
A 		1
(-2.9)
A 		0.8
(-3)
A 		1
(-2.9)
A 		8
C 1.3
(-3)
A 		7
(1.4)
A 		1.4
(-2.9)
A 		1.9
(-2.5)
A 		9
(3)
A 		8.5
(2.6)
A 		8
avr 4.1
(-1.8) 		6.4
(3) 		4
(-2) 		4.1
(-1.8) 		3.5
(-3) 		3.7
(-2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172459_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16555
Sequence Type Exemplar sequence
Representative Public ID C16E9.5 NCBI
Target Description C16E9.5 /REP_DB=WormBase Gene ID /WP=CE04019 /TR=Q18050 /GB=AAC47959.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C16E9.5
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C16E9.5 C16E9.5 /REP_DB=WormBase Gene ID /WP=CE04019 /TR=Q18050 /GB=AAC47959.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6949654-6949795(-) 82.98 100.0
Sequence
Target Sequence 
>C. ELEGANS:172459_AT
agaagcttgtcatcgtttcatcggcaaagagacgggtggacattagaccacgccccacag
gaaacctttcgagtttcatccacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCTTGTCATCGTTTCATCGGC 620 71 38 Antisense
GCTTGTCATCGTTTCATCGGCAAAG 434 307 42 Antisense
CTTGTCATCGTTTCATCGGCAAAGA 229 219 43 Antisense
TGTCATCGTTTCATCGGCAAAGAGA 633 557 45 Antisense
TCATCGTTTCATCGGCAAAGAGACG 495 607 47 Antisense
GTTTCATCGGCAAAGAGACGGGTGG 271 449 52 Antisense
TCATCGGCAAAGAGACGGGTGGACA 709 607 55 Antisense
ATCGGCAAAGAGACGGGTGGACATT 670 33 57 Antisense
GACGGGTGGACATTAGACCACGCCC 211 365 68 Antisense
CCACAGGAAACCTTTCGAGTTTCAT 288 261 92 Antisense
GAAACCTTTCGAGTTTCATCCACCT 616 357 98 Antisense
Sequence Source Affymetrix Proprietary Database