[Home] | [Total List]

[172458_at]

Description B0554.3 /REP_DB=WormBase Gene ID /WP=CE07775 /TR=P91005 /GB=AAB37614.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.6
(-2.2)
A 		4.2
(-2.4)
A 		2.9
(-3)
A 		15.1
(3)
A 		12
B 2.5
(-3)
A 		3.3
(0)
A 		3.2
(-0.4)
A 		4.1
(3)
A 		2
C 3.8
(2.3)
A 		2.2
(-3)
A 		4
(3)
A 		2.3
(-2.7)
A 		2
avr 3.6
(-2.4) 		3.2
(-3) 		3.4
(-2.7) 		7.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7
(-1.2)
A 		19.7
(3)
A 		2.8
(-2.6)
A 		3.1
(-2.5)
A 		1.6
(-3)
A 		3.1
(-2.5)
A 		18
B 3.3
(-2.1)
A 		1.9
(-3)
A 		11.6
(3)
A 		2.4
(-2.7)
A 		2.5
(-2.6)
A 		2.8
(-2.4)
A 		10
C 3
(-2.2)
A 		1.4
(-3)
A 		4.1
(-1.6)
A 		13.1
(3)
A 		3.2
(-2.1)
A 		6.3
(-0.5)
A 		12
avr 4.4
(-0.7) 		7.7
(3) 		6.2
(1.3) 		6.2
(1.3) 		2.4
(-3) 		4.1
(-1.1) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.7
(0.9)
A 		0.9
(-2.6)
A 		0.8
(-3)
A 		2.2
(3)
A 		1
B 0.8
(0)
A 		0.8
(0)
A 		0.7
(-3)
A 		0.9
(3)
A 		0
C 1.3
(2.4)
A 		0.6
(-1.8)
A 		1.4
(3)
A 		0.4
(-3)
A 		1
avr 1.3
(3) 		0.8
(-3) 		1
(-0.6) 		1.2
(1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.3
(-2.3)
A 		7
(3)
A 		0.6
(-2.9)
A 		0.8
(-2.7)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		7
B 1.2
(-1.4)
A 		0.6
(-3)
A 		2.8
(3)
A 		0.6
(-3)
A 		1
(-1.9)
A 		1
(-1.9)
A 		2
C 1.1
(-1.1)
A 		0.4
(-3)
A 		1
(-1.4)
A 		2.6
(3)
A 		1
(-1.4)
A 		2.1
(1.6)
A 		2
avr 1.2
(-1.7) 		2.7
(3) 		1.5
(-0.8) 		1.3
(-1.4) 		0.8
(-3) 		1.3
(-1.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14962
Sequence Type Exemplar sequence
Representative Public ID B0554.3 NCBI
Target Description B0554.3 /REP_DB=WormBase Gene ID /WP=CE07775 /TR=P91005 /GB=AAB37614.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070798 NCBI Caenorhabditis elegans B0554.3 (B0554.3) mRNA, complete cds. 11/11 None
B0554.3 ENSEMBL cdna:known chromosome:CEL140:V:433977:434230:1 gene:B0554.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032185 7/11 Cross Hyb Matching Probes None
GENEFINDER00000032190 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:433976-434230(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0554.3
Entrez Gene 182034 Entrez gene
SwissProt P91005 EMBL-EBI
WormBase CE07775 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37614 Hypothetical protein B0554.3 [Caenorhabditis elegans] ref|NP_503199.1| B0554.3 [Caenorhabditis elegans] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:172458_AT
aagtttggtggaagcgtgttttgcaacttctccgggaaccggaccagttgcgagcagtac
agctcaacctctgagtaagtggctcaattttgagagtttgaaaatgacctgcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTTGGTGGAAGCGTGTTTTGCA 360 157 30 Antisense
GGAAGCGTGTTTTGCAACTTCTCCG 457 531 39 Antisense
TGCAACTTCTCCGGGAACCGGACCA 683 575 51 Antisense
CTCCGGGAACCGGACCAGTTGCGAG 322 195 59 Antisense
AACCGGACCAGTTGCGAGCAGTACA 413 145 66 Antisense
CGGACCAGTTGCGAGCAGTACAGCT 429 243 69 Antisense
GCGAGCAGTACAGCTCAACCTCTGA 63 291 79 Antisense
GCAGTACAGCTCAACCTCTGAGTAA 519 311 83 Antisense
GCTCAACCTCTGAGTAAGTGGCTCA 470 301 91 Antisense
GTAAGTGGCTCAATTTTGAGAGTTT 21 461 104 Antisense
TGAGAGTTTGAAAATGACCTGCATT 248 567 120 Antisense
Sequence Source Affymetrix Proprietary Database