[Home] | [Total List]

[172457_x_at]

Description F21E9.1 /REP_DB=WormBase Gene ID /WP=CE09525 /TR=O16587 /GB=AAC70878.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 16.7
(-2.7)
A 		8.7
(-3)
A 		17.3
(-2.6)
A 		154.9
(3)
A 		146
B 4.2
(-3)
A 		57.8
(3)
A 		13.5
(-2)
A 		12.7
(-2)
A 		54
C 14.6
(-2.7)
A 		9.5
(-3)
A 		10.4
(-3)
A 		119.3
(3)
A 		110
avr 11.8
(-3) 		25.3
(-2) 		13.7
(-2.9) 		95.6
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 5.7
(-3)
A 		5.9
(-3)
A 		14.8
(-1.9)
A 		12.3
(-2.2)
A 		55.5
(3)
A 		54.5
(2.9)
A 		50
B 29.4
(0.4)
A 		44.7
(2.5)
A 		4
(-3)
A 		15.4
(-1.5)
A 		48.2
(3)
A 		15.5
(-1.4)
A 		44
C 8
(-2.4)
A 		20.8
(3)
A 		6.5
(-3)
A 		19
(2.2)
A 		17.5
(1.6)
A 		10.8
(-1.2)
A 		14
avr 14.4
(-1.9) 		23.8
(-0.1) 		8.4
(-3) 		15.6
(-1.7) 		40.4
(3) 		26.9
(0.5) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 6.1
(-1.8)
A 		1.9
(-3)
A 		4.5
(-2.3)
A 		22.7
(3)
A 		21
B 1.3
(-3)
A 		14.3
(3)
A 		3.1
(-2.2)
A 		2.7
(-2.4)
A 		13
C 4.8
(-2.3)
A 		2.7
(-3)
A 		3.6
(-2.7)
A 		20.1
(3)
A 		17
avr 4.1
(-2.8) 		6.3
(-1.6) 		3.7
(-3) 		15.2
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1
(-3)
A 		2.1
(-2.6)
A 		3.2
(-2.2)
A 		3.1
(-2.2)
A 		16.7
(3)
A 		13.3
(1.7)
A 		16
B 10.2
(-0)
A 		14.9
(1.5)
A 		1
(-3)
A 		4.1
(-2)
A 		19.6
(3)
A 		5.8
(-1.5)
A 		19
C 3
(-1.3)
A 		6.4
(3)
A 		1.7
(-3)
A 		3.8
(-0.3)
A 		5.7
(2.1)
A 		3.6
(-0.6)
A 		5
avr 4.7
(-1.7) 		7.8
(-0.1) 		2
(-3) 		3.7
(-2.2) 		14
(3) 		7.6
(-0.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172457_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18430
Sequence Type Exemplar sequence
Representative Public ID F21E9.1 NCBI
Target Description F21E9.1 /REP_DB=WormBase Gene ID /WP=CE09525 /TR=O16587 /GB=AAC70878.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075845 NCBI Caenorhabditis elegans F21E9.1 (F21E9.1) mRNA, complete cds. 11/11 None
F21E9.1 ENSEMBL cdna:known chromosome:CEL140:X:1339494:1343375:1 gene:F21E9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066037 4/11 Cross Hyb Matching Probes A 
K03F8.1 4/11 Cross Hyb Matching Probes A 
Y45F3A.7 8/11 Cross Hyb Matching Probes A 
T02E9.4 7/11 Cross Hyb Matching Probes None
K08G2.4 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl F21E9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC70878 Hypothetical protein F21E9.1 [Caenorhabditis elegans] ref|NP_508246.1| F21E9.1 [Caenorhabditis elegans] 0.0
blast T23706 hypothetical protein M04C7.2 - Caenorhabditis elegans 1.0E-169
blast NP_494684 F53C3.9 [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.5E-18
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.1E-36
Sequence
Target Sequence 
>C. ELEGANS:172457_X_AT
ttctgttgatggtgtccccattaccccatcctctactgttcgagacttaggtctaattac
tgattgcaagctaaagtttgaacaccacatagttaaagttagttgcctagccatgcttag
gtctaaacaaattctcaaagcattctcctccaattccccaaagttctacgcccaccttta
taaaacttatgttgctcccattatgaattattgctctgaagtctatgctccccactcaaa
ctcagtgctttcagcaaaacttgaacaacctttaaggcactttaccaagcgcgttcttca
aagatgcaatacaaaattctcatcttatgaaaatcgactcagtataatggagctccactc
caccagacacaatagaattaaggctcaattgaaagtactgtatagactgttaacaggtac
ctctcatttttctaaccttagacaatttgttactttctctagttctaataggcacccaat
gattttagttaggaaggacaaatgctccacgcatttctttgctcttatcatcccagtctg
gaacaatttattcaaaaatgttacggtttttatgtccccatatcagttctgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGTTGATGGTGTCCCCATTACC 580 693 2901 Antisense
CCATCCTCTACTGTTCGAGACTTAG 643 271 2926 Antisense
AAGTTAGTTGCCTAGCCATGCTTAG 675 155 2996 Antisense
ACAAATTCTCAAAGCATTCTCCTCC 661 111 3027 Antisense
TTATTGCTCTGAAGTCTATGCTCCC 317 679 3108 Antisense
TCCCCACTCAAACTCAGTGCTTTCA 90 597 3129 Antisense
TTAAGGCACTTTACCAAGCGCGTTC 151 683 3172 Antisense
GTATAATGGAGCTCCACTCCACCAG 685 453 3242 Antisense
TAACAGGTACCTCTCATTTTTCTAA 525 639 3311 Antisense
CACGCATTTCTTTGCTCTTATCATC 703 199 3408 Antisense
TATGTCCCCATATCAGTTCTGTGAA 485 655 3471 Antisense
Sequence Source Affymetrix Proprietary Database