[Home] | [Total List]

[172456_x_at]

Description ZC178.1 /REP_DB=WormBase Gene ID /WP=CE15062 /TR=O17083 /GB=AAB70339.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 21.1
(-2.5)
A 		5.2
(-2.9)
A 		2.9
(-3)
A 		210.4
(3)
P 		208
B 11.3
(-3)
A 		12.6
(-2.9)
A 		22
(-1.8)
A 		64.6
(3)
P 		53
C 17.8
(-2.7)
A 		4.5
(-3)
A 		9.6
(-2.9)
A 		322.2
(3)
P 		318
avr 16.7
(-2.7) 		7.4
(-3) 		11.5
(-2.9) 		199.1
(3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 15.7
(-0.3)
A 		4.8
(-3)
A 		27.5
(2.6)
A 		8.8
(-2)
A 		29.1
(3)
A 		24.8
(1.9)
A 		24
B 27.7
(1.4)
A 		8.5
(-2.2)
A 		36.4
(3)
A 		13.4
(-1.3)
A 		27
(1.2)
A 		4.2
(-3)
A 		32
C 8.7
(-1.9)
A 		32.1
(3)
A 		24.4
(1.4)
A 		3.4
(-3)
A 		4.2
(-2.8)
A 		13.2
(-1)
A 		29
avr 17.4
(-0.4) 		15.1
(-1.1) 		29.4
(3) 		8.5
(-3) 		20.1
(0.3) 		14.1
(-1.4) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 7.7
(-1.6)
A 		1.1
(-2.9)
A 		0.8
(-3)
A 		30.8
(3)
P 		30
B 3.6
(-2.7)
A 		3.1
(-3)
A 		5.1
(-1.9)
A 		13.8
(3)
P 		11
C 5.9
(-2.5)
A 		1.3
(-3)
A 		3.4
(-2.8)
A 		54.3
(3)
P 		53
avr 5.7
(-2.3) 		1.8
(-3) 		3.1
(-2.8) 		33
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.9
(-2)
A 		1.7
(-3)
A 		6
(0.6)
A 		2.2
(-2.6)
A 		8.8
(3)
A 		6
(0.6)
A 		7
B 9.6
(2.1)
A 		2.8
(-2.2)
A 		8.8
(1.6)
A 		3.5
(-1.8)
A 		11
(3)
A 		1.6
(-3)
A 		9
C 3.2
(-1.4)
A 		9.8
(3)
A 		6.2
(0.6)
A 		0.7
(-3)
A 		1.4
(-2.5)
A 		4.4
(-0.6)
A 		9
avr 5.2
(0.7) 		4.8
(0.2) 		7
(2.9) 		2.1
(-3) 		7.1
(3) 		4
(-0.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172456_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12180
Sequence Type Exemplar sequence
Representative Public ID ZC178.1 NCBI
Target Description ZC178.1 /REP_DB=WormBase Gene ID /WP=CE15062 /TR=O17083 /GB=AAB70339.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072841(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072841 NCBI Caenorhabditis elegans ZC178.1 (ZC178.1) mRNA, complete cds. 11/11 None
SNAP00000009736 ENSEMBL cdna:SNAP chromosome:CEL140:V:8704020:8705648:1 11/11 None
GENEFINDER00000009753 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8704020:8705648:1 11/11 None
ZC178.1 ENSEMBL cdna:known chromosome:CEL140:V:8704020:8705648:1 gene:ZC178.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000638 6/11 Cross Hyb Matching Probes None
GENEFINDER00000000642 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8704020-8705649(+) 100.0 100.0
chrV:8702814-8704726(+) 90.67 90.67
chrV:8702394-8704350(+) 90.36 90.36
chrV:8702514-8704486(+) 90.61 90.61
chrV:8702154-8703984(+) 89.87 89.87
chrV:8702541-8704230(+) 88.58 88.58
chrV:8703354-8704990(+) 85.64 85.64
chrV:8701947-8703880(+) 85.08 85.08
chrV:8701947-8704186(+) 73.85 73.85
chrV:8703534-8705171(+) 65.01 65.01
chrV:8701957-8703024(+) 62.25 62.25
chrV:8701938-8702844(+) 52.92 52.92
Public Domain and Genome References
Gene Title
Ensembl ZC178.1
Entrez Gene 191092 Entrez gene
SwissProt O17083 EMBL-EBI
WormBase CE15062 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70339 Hypothetical protein ZC178.1 [Caenorhabditis elegans] ref|NP_505242.1| ZC178.1 [Caenorhabditis elegans] 1.0E-120
Sequence
Target Sequence 
>C. ELEGANS:172456_X_AT
ggattcagttgagctcgttatgtcggttgaagacacaattggagtggtgcttgaggagct
ggattcagttgagctcgttatgtcggttgaagacacaattggagtggtgcttgaggagct
gaattcagttgagctcgttatgtcggttgaagacacaattggggtggtgcttgaggagct
gaattcagttgagctcgttatgtcggttgaagacacaattggagtggtgcttgaggagct
ggattcagttgagctcgttatgtcggttgaatacacaattggagtgttgcttgaggagct
ggattcagttgagctcgttatgtcggttgaagacacaattggagtggtgcttgaggagct
ggattcagttgagctcgttatgtcggttgaatacacaattggagtgttgcttgaggagct
ggattcagttgagctcgttatgccagttgtcgatacaattggagtggtgactggattggg
aactgaaaattgtgatgtggttgaaaatagtttcgaggtattacctgatttgtggttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTCAGTTGAGCTCGTTATGTCG 664 507 1074 Antisense
AGTTGAGCTCGTTATGTCGGTTGAA 93 65 1140 Antisense
GGGGTGGTGCTTGAGGAGCTGAATT 411 497 1234 Antisense
GAATTCAGTTGAGCTCGTTATGTCG 325 325 1254 Antisense
GCTGGATTCAGTTGAGCTCGTTATG 168 295 1311 Antisense
CAGTTGAGCTCGTTATGTCGGTTGA 294 207 1379 Antisense
GATTCAGTTGAGCTCGTTATGTCGG 589 429 1435 Antisense
GGATTCAGTTGAGCTCGTTATGCCA 665 507 1494 Antisense
GCTCGTTATGCCAGTTGTCGATACA 169 299 1506 Antisense
GGAGTGGTGACTGGATTGGGAACTG 555 515 1534 Antisense
CGAGGTATTACCTGATTTGTGGTTT 478 247 1587 Antisense
Sequence Source Affymetrix Proprietary Database