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[172455_x_at]

Description F29G6.3B /REP_DB=WormBase Gene ID /WP=CE18655 /TR=Q93636 /GB=CAB01754.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 03      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 80      6grp_total > 25      4grp_total > 50      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 369
1 2 3 4 range
A 235.8
(-2.1)
P 		537.9
(3)
P 		401.1
(0.7)
P 		185
(-3)
P 		353
B 312.7
(0)
P 		450
(3)
P 		449.5
(3)
P 		171.9
(-3)
P 		278
C 345.3
(-0.3)
P 		541.3
(3)
P 		453.3
(1.5)
P 		184.3
(-3)
P 		357
avr 297.9
(-0.9) 		509.7
(3) 		434.6
(1.6) 		180.4
(-3) 		329

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 246.7
(1.9)
P 		285.8
(3)
P 		197
(0.6)
P 		113.9
(-1.6)
P 		125.3
(-1.3)
P 		63.2
(-3)
P 		223
B 298.2
(2.7)
P 		307
(3)
P 		253
(1.5)
P 		136.2
(-1.9)
P 		97.6
(-3)
P 		141.1
(-1.8)
P 		209
C 282.1
(1.1)
P 		356.3
(3)
P 		201.6
(-0.9)
P 		116.2
(-3)
P 		117.6
(-3)
P 		153.3
(-2.1)
P 		240
avr 275.7
(1.8) 		316.4
(3) 		217.2
(0.1) 		122.1
(-2.7) 		113.5
(-3) 		119.2
(-2.8) 		203
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 85.9
(0.9)
P 		116.8
(3)
P 		104.9
(2.2)
P 		27.1
(-3)
P 		90
B 99.7
(2.1)
P 		111.1
(3)
P 		104.2
(2.4)
P 		36.6
(-3)
P 		75
C 114.3
(0.9)
P 		155.6
(2.9)
P 		158
(3)
P 		31.1
(-3)
P 		127
avr 100
(1.3) 		127.8
(3) 		122.4
(2.7) 		31.6
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 45.5
(-0.9)
P 		101.7
(3)
P 		42.9
(-1.1)
P 		28.9
(-2.1)
P 		37.8
(-1.4)
P 		15.4
(-3)
P 		86
B 103.7
(3)
P 		102.2
(2.9)
P 		61.4
(-0.8)
P 		36.1
(-3)
P 		39.7
(-2.7)
P 		52.6
(-1.5)
P 		68
C 104.6
(2.7)
P 		108.7
(3)
P 		51.3
(-1)
P 		23.4
(-3)
P 		38.1
(-2)
P 		51.3
(-1)
P 		85
avr 84.6
(1.4) 		104.2
(3) 		51.9
(-1.2) 		29.5
(-3) 		38.5
(-2.3) 		39.8
(-2.2) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172455_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16352
Sequence Type Exemplar sequence
Representative Public ID F29G6.3B NCBI
Target Description F29G6.3B /REP_DB=WormBase Gene ID /WP=CE18655 /TR=Q93636 /GB=CAB01754.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077522 NCBI Caenorhabditis elegans F29G6.3b (F29G6.3) mRNA, complete cds. 11/11 A 
SNAP00000010620 ENSEMBL cdna:SNAP chromosome:CEL140:X:11511659:11518861:-1 11/11 None
F29G6.3b.1 ENSEMBL cdna:known chromosome:CEL140:X:11512773:11518981:-1 gene:F29G6.3 11/11 None
F29G6.3b.2 ENSEMBL cdna:known chromosome:CEL140:X:11512773:11518987:-1 gene:F29G6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010622 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181340 3 1 NM_001029443 171853_x_at (9), 173626_s_at (11)
NM_077521 173626_s_at (11)
NM_077522 171766_x_at (11), 172455_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11512883-11518938(-) 100.0 100.0
Public Domain and Genome References
Ensembl F29G6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01754 Hypothetical protein F29G6.3b [Caenorhabditis elegans] ref|NP_509923.1| F29G6.3b [Caenorhabditis elegans] 0.0
blast CAH10796 Hypothetical protein F29G6.3c [Caenorhabditis elegans] ref|NP_001024614.1| F29G6.3c [Caenorhabditis elegans] 0.0
blast CAE70625 Hypothetical protein CBG17311 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004019 EMBL-EBI YLP motif 5.8
Pfam IPR004019 EMBL-EBI YLP motif 36.0
Pfam IPR004019 EMBL-EBI YLP motif 2.9
Pfam IPR004019 EMBL-EBI YLP motif 73.0
Pfam IPR004019 EMBL-EBI YLP motif 28.0
Pfam IPR004019 EMBL-EBI YLP motif 5.8
Pfam IPR004019 EMBL-EBI YLP motif 36.0
Pfam IPR004019 EMBL-EBI YLP motif 2.9
Pfam IPR004019 EMBL-EBI YLP motif 73.0
Pfam IPR004019 EMBL-EBI YLP motif 28.0
Sequence
Target Sequence 
>C. ELEGANS:172455_X_AT
aatcacacgcaacatcattacactccatctcatcaaattgtatccaatacatatgacgat
atcgacactcatcatggatatttgcctcaaattccgaggaaagaaaccgcagctcgtgtt
ccattgggtcatcattttgtgccacaaattccacacaaagaagtggctcctgactacgat
catcatcaccactatgtgccatctgttcagcccaaagcgccaactccagccgtagattac
caacatcactatttgccttcagtcaagaaaccaactagcactaccactgatatgattcga
caacaaaggaaaaaaattctgaagagcactgatgatgatgaagatcaagaaaatcagtat
gtggcgaaaccaccagtctacacaaatgcattcgtaaaaccgtacaagacaattcctgat
gaaccaacaaactacatgctcaaaaatggaaaatctcgtaacaatggcattcctgaggag
ccatcgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCACACGCAACATCATTACACTC 355 171 4834 Antisense
CATTACACTCCATCTCATCAAATTG 470 215 4849 Antisense
GACGATATCGACACTCATCATGGAT 136 377 4888 Antisense
AGCTCGTGTTCCATTGGGTCATCAT 648 79 4944 Antisense
TCCTGACTACGATCATCATCACCAC 700 593 5001 Antisense
ATCACCACTATGTGCCATCTGTTCA 339 29 5018 Antisense
CAACTCCAGCCGTAGATTACCAACA 602 187 5054 Antisense
CCAACATCACTATTTGCCTTCAGTC 141 277 5073 Antisense
AAACCAACTAGCACTACCACTGATA 246 125 5101 Antisense
GAAACCACCAGTCTACACAAATGCA 56 359 5199 Antisense
TGGCATTCCTGAGGAGCCATCGCAA 351 545 5298 Antisense
Sequence Source Affymetrix Proprietary Database