[Home] | [Total List]

[172454_x_at]

Description F18E9.6 /REP_DB=WormBase Gene ID /WP=CE02663 /TR=Q19566 /GB=AAA68811.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3406
1 2 3 4 range
A 458.6
(-2.6)
A 		375.6
(-2.8)
A 		283.8
(-3)
A 		3123.2
(3)
P 		2839
B 734.3
(0.2)
M 		279.6
(-3)
A 		299.6
(-2.9)
A 		1127.5
(3)
P 		848
C 538.9
(-2.4)
A 		229.8
(-3)
A 		206.6
(-3)
A 		3612.6
(3)
P 		3406
avr 577.3
(-2.2) 		295
(-2.9) 		263.3
(-3) 		2621.1
(3) 		2358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1336
1 2 3 4 5 6 range
A 361.3
(-1.7)
A 		278.1
(-2.2)
A 		1289.3
(3)
P 		160
(-2.8)
A 		524.9
(-0.9)
M 		114.9
(-3)
A 		1174
B 390.6
(-0.3)
A 		594.2
(3)
A 		411.6
(0.1)
M 		261.3
(-2.3)
A 		305.7
(-1.6)
A 		219.5
(-3)
A 		375
C 208.1
(-2.6)
A 		1450.5
(3)
P 		201.2
(-2.6)
A 		346.9
(-2)
A 		119.8
(-3)
A 		215.7
(-2.6)
A 		1331
avr 320
(-1.6) 		774.3
(3) 		634
(1.6) 		256.1
(-2.3) 		316.8
(-1.6) 		183.4
(-3) 		591
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 543
1 2 3 4 range
A 167
(-1.5)
A 		81.5
(-2.9)
A 		74.2
(-3)
A 		457.2
(3)
P 		383
B 234.2
(2.8)
M 		69.1
(-3)
A 		69.4
(-3)
A 		240.3
(3)
P 		171
C 178.4
(-1.8)
A 		66.1
(-3)
A 		72
(-2.9)
A 		609.1
(3)
P 		543
avr 193.2
(-1) 		72.2
(-3) 		71.9
(-3) 		435.5
(3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 66.6
(-2.1)
A 		98.9
(-1.3)
A 		280.8
(3)
P 		40.6
(-2.7)
A 		158.4
(0.1)
M 		28
(-3)
A 		253
B 135.9
(0.1)
A 		197.8
(3)
A 		100
(-1.6)
M 		69.2
(-3)
A 		124.2
(-0.4)
A 		81.8
(-2.4)
A 		129
C 77.1
(-2.4)
A 		442.6
(3)
P 		51.2
(-2.8)
A 		69.8
(-2.5)
A 		38.8
(-3)
A 		72.2
(-2.5)
A 		404
avr 93.2
(-1.9) 		246.4
(3) 		144
(-0.3) 		59.9
(-3) 		107.1
(-1.5) 		60.7
(-3) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172454_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16019
Sequence Type Exemplar sequence
Representative Public ID F18E9.6 NCBI
Target Description F18E9.6 /REP_DB=WormBase Gene ID /WP=CE02663 /TR=Q19566 /GB=AAA68811.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077052(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077052 NCBI Caenorhabditis elegans F18E9.6 (F18E9.6) mRNA, complete cds. 11/11 None
SNAP00000039243 ENSEMBL cdna:SNAP chromosome:CEL140:X:8571231:8576178:-1 10/11 None
F18E9.6 ENSEMBL cdna:known chromosome:CEL140:X:8575903:8576178:-1 gene:F18E9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029225 1/11 Cross Hyb Matching Probes None
SNAP00000013314 1/11 Cross Hyb Matching Probes None
SNAP00000003365 1/11 Cross Hyb Matching Probes None
SNAP00000017447 2/11 Cross Hyb Matching Probes None
SNAP00000013902 1/11 Cross Hyb Matching Probes None
GENEFINDER00000013906 1/11 Cross Hyb Matching Probes None
SNAP00000004117 1/11 Cross Hyb Matching Probes None
SNAP00000037535 3/11 Cross Hyb Matching Probes None
GENEFINDER00000037541 3/11 Cross Hyb Matching Probes None
SNAP00000031107 2/11 Cross Hyb Matching Probes None
GENEFINDER00000031114 2/11 Cross Hyb Matching Probes None
SNAP00000032397 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032410 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8575901-8576177(-) 37.32 100.0
Public Domain and Genome References
Gene Title
Ensembl F18E9.6
Entrez Gene 184649 Entrez gene
SwissProt Q19566 EMBL-EBI
WormBase CE02663 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68811 Hypothetical protein F18E9.6 [Caenorhabditis elegans] ref|NP_509453.1| F18E9.6 [Caenorhabditis elegans] 4.0E-23
blast AAA68811 Hypothetical protein F18E9.6 [Caenorhabditis elegans] ref|NP_509453.1| F18E9.6 [Caenorhabditis elegans] 2.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.9E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.6E-5
Sequence
Target Sequence 
>C. ELEGANS:172454_X_AT
tcaccacaaagtgtctcaccacgaaaggtctcaccacgatggatctcaccacgaaaggtc
tctccacgatgggtctcaccacgatgcgtctcaccacgatggatctcaccacgaaaggtc
tctccacgatgggtctcaccaggatgcgtctcaccacgatagggctgtacaaccggacgt
ccggtggtccgaaccggacgcacatgcgtccggttggggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCACAAAGTGTCTCACCACGAA 623 625 20 Antisense
TGTCTCACCACGAAAGGTCTCACCA 336 557 31 Antisense
AAAGGTCTCACCACGATGGATCTCA 382 121 43 Antisense
TGGATCTCACCACGAAAGGTCTCTC 162 551 59 Antisense
ACCACGATGGATCTCACCACGAAAG 679 85 112 Antisense
CCACGAAAGGTCTCTCCACGATGGG 207 275 128 Antisense
CACGATGGGTCTCACCAGGATGCGT 423 199 144 Antisense
TCTCACCACGATAGGGCTGTACAAC 237 613 168 Antisense
GGCTGTACAACCGGACGTCCGGTGG 148 539 182 Antisense
TCCGGTGGTCCGAACCGGACGCACA 367 595 199 Antisense
GGACGCACATGCGTCCGGTTGGGGG 628 513 215 Antisense
Sequence Source Affymetrix Proprietary Database