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[172453_x_at]

Description Y39B6B.M /REP_DB=WormBase Gene ID /WP=CE21688 /TR=Q9NEU7 /GB=CAB60918.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 5.3
(-2.8)
A 		2.9
(-3)
A 		3
(-3)
A 		71.6
(3)
A 		69
B 11.1
(-1.3)
A 		11.2
(-1.3)
A 		2.2
(-3)
A 		33.9
(3)
A 		32
C 5.9
(-2.5)
A 		2.8
(-3)
A 		15.1
(-1.2)
A 		43.1
(3)
A 		40
avr 7.4
(-2.8) 		5.6
(-3) 		6.8
(-2.8) 		49.5
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 42.6
(0.6)
A 		5.5
(-3)
A 		27.5
(-0.9)
A 		5.9
(-3)
A 		49.8
(1.3)
A 		68
(3)
A 		63
B 1.7
(-3)
A 		11.5
(-2)
A 		21.2
(-0.9)
A 		7.3
(-2.4)
A 		42.7
(1.4)
A 		57.7
(3)
A 		56
C 3.8
(-3)
A 		18.8
(-1.4)
A 		3.5
(-3)
A 		7.2
(-2.6)
A 		16.5
(-1.6)
A 		59.7
(3)
A 		56
avr 16
(-2) 		11.9
(-2.4) 		17.4
(-1.8) 		6.8
(-3) 		36.3
(0.2) 		61.8
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.9
(-2.2)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		10.5
(3)
A 		10
B 3.5
(-0.3)
A 		2.8
(-0.9)
A 		0.5
(-3)
A 		7.2
(3)
A 		7
C 1.9
(-2)
A 		0.8
(-3)
A 		5.3
(1.2)
A 		7.3
(3)
A 		7
avr 2.4
(-2.1) 		1.4
(-3) 		2.2
(-2.3) 		8.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7.9
(-0.4)
A 		1.9
(-2.8)
A 		6
(-1.2)
A 		1.5
(-3)
A 		15
(2.4)
A 		16.5
(3)
A 		15
B 0.6
(-3)
A 		3.8
(-2.1)
A 		5.2
(-1.7)
A 		1.9
(-2.6)
A 		17.4
(1.8)
A 		21.5
(3)
A 		21
C 1.4
(-2.8)
A 		5.7
(-1.5)
A 		0.9
(-3)
A 		1.4
(-2.8)
A 		5.3
(-1.6)
A 		20
(3)
A 		19
avr 3.3
(-2.4) 		3.8
(-2.3) 		4
(-2.2) 		1.6
(-3) 		12.6
(0.7) 		19.3
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172453_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19430
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.M NCBI
Target Description Y39B6B.M /REP_DB=WormBase Gene ID /WP=CE21688 /TR=Q9NEU7 /GB=CAB60918.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171577 NCBI Caenorhabditis elegans Y39B6A.30 (Y39B6A.30) mRNA, complete cds. 11/11 None
SNAP00000030535 ENSEMBL cdna:SNAP chromosome:CEL140:V:19017297:19022574:1 11/11 None
GENEFINDER00000030705 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19017210:19022574:1 11/11 None
Y39B6A.30 ENSEMBL cdna:known chromosome:CEL140:V:19017210:19022574:1 gene:Y39B6A.30 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075290 1/11 Cross Hyb Matching Probes A 
NM_171589 2/11 Cross Hyb Matching Probes A 
SNAP00000017351 1/11 Cross Hyb Matching Probes None
GENEFINDER00000017384 1/11 Cross Hyb Matching Probes None
SNAP00000030545 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030693 2/11 Cross Hyb Matching Probes None
Y80D3A.8 1/11 Cross Hyb Matching Probes A 
Y39B6A.18 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19017209-19022574(+) 92.31 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.30
Entrez Gene 180248 Entrez gene
SwissProt Q8MYN1 EMBL-EBI
WormBase CE29870 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD31825 Hypothetical protein Y39B6A.30 [Caenorhabditis elegans] ref|NP_741667.1| Y39B6A.30 [Caenorhabditis elegans] 0.0
blast T45039 hypothetical protein Y39B6B.m [imported] - Caenorhabditis elegans 0.0
blast CAB60442 Hypothetical protein Y80D3A.8 [Caenorhabditis elegans] ref|NP_507691.1| Y80D3A.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.6E-26
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.0E-72
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.6E-26
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.0E-72
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.0E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741667.1 1 884-906
Y39B6A.30 1 884-906
SNAP00000030535 1 825-847
GENEFINDER00000030705 1 856-878
Sequence
Target Sequence 
>C. ELEGANS:172453_X_AT
aacactggaagttgtcgattcgaccggaaaatttgctacaagaactctgatgcattatca
atattcggaatggactggatatggagttccaaagagtcatgctgaattgtttgatctgat
ggaaattgtaaagaaaagcgagaagccaatcgtggtgcattgctcaaatggaatcggaag
atccatggccttcatcggaaccgagtgtcttgcccgtgaagttgaagccgatccgacaat
cgaactgactgaagctctgaaacacgtgcgcgagcatcgttggaatggagttcagaccaa
ttctcagctgtactggatgacattgggaaccatgtaccgtctgattaaagaatatggatt
tgatatgaagatgtatgagaaacaaatggcaatgttcacggatgtagtcaatcgtttgtt
ggcacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACTGGAAGTTGTCGATTCGACC 356 135 3687 Antisense
GAAGCCAATCGTGGTGCATTGCTCA 467 345 3828 Antisense
GAAGATCCATGGCCTTCATCGGAAC 154 339 3863 Antisense
TCATCGGAACCGAGTGTCTTGCCCG 227 617 3878 Antisense
TGCCCGTGAAGTTGAAGCCGATCCG 271 583 3897 Antisense
AGCCGATCCGACAATCGAACTGACT 329 83 3912 Antisense
CTGAAGCTCTGAAACACGTGCGCGA 56 239 3935 Antisense
ACACGTGCGCGAGCATCGTTGGAAT 619 109 3948 Antisense
GTTCAGACCAATTCTCAGCTGTACT 656 443 3976 Antisense
TTGGGAACCATGTACCGTCTGATTA 227 709 4009 Antisense
GTAGTCAATCGTTTGTTGGCACTTG 174 455 4090 Antisense
Sequence Source Affymetrix Proprietary Database