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[172452_x_at]

Description F29D10.2 /REP_DB=WormBase Gene ID /WP=CE05761 /TR=Q19899 /GB=CAB00093.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 48      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 5.9
(-3)
A 		22
(-0.9)
A 		50.9
(3)
A 		7.6
(-2.8)
A 		45
B 4.4
(-3)
A 		45.2
(2.1)
A 		52.2
(3)
P 		4.9
(-2.9)
A 		48
C 5
(-3)
A 		27.8
(1.8)
A 		33.8
(3)
A 		16.9
(-0.5)
A 		29
avr 5.1
(-3) 		31.7
(0.9) 		45.6
(3) 		9.8
(-2.3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 33.3
(-1.3)
A 		45.4
(-0.4)
A 		8.2
(-3)
A 		9.3
(-2.9)
A 		36.9
(-1)
A 		95.7
(3)
P 		88
B 5.8
(-3)
A 		17
(-2.4)
A 		29.4
(-1.7)
A 		22
(-2.1)
A 		45.3
(-0.9)
M 		117.7
(3)
P 		112
C 16
(-2.2)
A 		3.7
(-3)
A 		44.1
(-0.2)
A 		11.9
(-2.4)
A 		23.4
(-1.6)
A 		91.1
(3)
P 		87
avr 18.4
(-2.7) 		22
(-2.5) 		27.2
(-2.1) 		14.4
(-3) 		35.2
(-1.6) 		101.5
(3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.2
(-2.5)
A 		4.8
(-1.2)
A 		13.3
(3)
A 		1.1
(-3)
A 		12
B 1.4
(-2.8)
A 		11.2
(2.5)
A 		12.1
(3)
P 		1
(-3)
A 		11
C 1.6
(-3)
A 		8
(0.8)
A 		11.8
(3)
A 		2.9
(-2.2)
A 		10
avr 1.7
(-3) 		8
(0.5) 		12.4
(3) 		1.7
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 6.1
(-1.8)
A 		16.1
(1)
A 		1.8
(-3)
A 		2.4
(-2.8)
A 		11.1
(-0.4)
A 		23.3
(3)
P 		22
B 2
(-3)
A 		5.7
(-2.5)
A 		7.1
(-2.3)
A 		5.8
(-2.5)
A 		18.4
(-0.7)
M 		43.9
(3)
P 		42
C 5.9
(-2)
A 		1.1
(-3)
A 		11.2
(-0.9)
A 		2.4
(-2.7)
A 		7.6
(-1.7)
A 		30.5
(3)
P 		29
avr 4.7
(-2.8) 		7.6
(-2.2) 		6.7
(-2.3) 		3.5
(-3) 		12.4
(-1.2) 		32.6
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172452_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1041
Sequence Type Exemplar sequence
Representative Public ID F29D10.2 NCBI
Target Description F29D10.2 /REP_DB=WormBase Gene ID /WP=CE05761 /TR=Q19899 /GB=CAB00093.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059990 NCBI Caenorhabditis elegans F29D10.2 (F29D10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000040563 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8848275:8850746:1 11/11 None
F29D10.2 ENSEMBL cdna:known chromosome:CEL140:I:8850082:8850476:1 gene:F29D10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026751 1/11 Cross Hyb Matching Probes None
NM_063873 1/11 Cross Hyb Matching Probes A 
SNAP00000011342 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011348 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011350 1/11 Cross Hyb Matching Probes None
C06A1.6 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10565006-10565274(+) 71.79 71.79
Public Domain and Genome References
Gene Title
Ensembl F29D10.2
Entrez Gene 185118 Entrez gene
SwissProt Q19899 EMBL-EBI
WormBase CE38335 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00093 Hypothetical protein F29D10.2 [Caenorhabditis elegans] ref|NP_492391.2| F29D10.2 [Caenorhabditis elegans] 6.0E-17
blast CAB00092 Hypothetical protein F29D10.1 [Caenorhabditis elegans] ref|NP_492390.1| F29D10.1 [Caenorhabditis elegans] 2.0E-12
blast CAI79131 Hypothetical protein C06A1.7 [Caenorhabditis elegans] ref|NP_001021922.1| C06A1.7 [Caenorhabditis elegans] 4.0E-12
blast CAA90055 Hypothetical protein C06A1.6 [Caenorhabditis elegans] ref|NP_496274.1| C06A1.6 [Caenorhabditis elegans] 7.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000040563 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:172452_X_AT
tggaggctgttgtggatgttgtggatgtggaggaggtggtggaggatgtggatgttgttg
ttgtagaccaagatgctgttgctgttgtagacctaaatgttgttgtacttgttgtagaac
ttgttgctgtactcgatgttgtacttgctgcagaccatgctgttgtggatgtggttgcgg
atgtggttgtggatgctgtggatgtggaggtggaggtcgtaagcgtcgttcccttcaaaa
acttcgaattgatgaagccaatcgtgcacttgggatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGGCTGTTGTGGATGTTGTGGA 91 551 14 Antisense
GTGGAGGAGGTGGTGGAGGATGTGG 603 489 40 Antisense
AGGATGTGGATGTTGTTGTTGTAGA 411 57 56 Antisense
GATGCTGTTGCTGTTGTAGACCTAA 25 415 85 Antisense
GAACTTGTTGCTGTACTCGATGTTG 386 351 130 Antisense
CTCGATGTTGTACTTGCTGCAGACC 613 231 145 Antisense
GCTGCAGACCATGCTGTTGTGGATG 140 297 160 Antisense
ATGTGGTTGCGGATGTGGTTGTGGA 596 49 182 Antisense
TGGTTGTGGATGCTGTGGATGTGGA 238 551 197 Antisense
GAGGTGGAGGTCGTAAGCGTCGTTC 287 401 220 Antisense
GAAGCCAATCGTGCACTTGGGATTA 468 345 267 Antisense
Sequence Source Affymetrix Proprietary Database