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[172451_x_at]

Description W05H7.2 /REP_DB=WormBase Gene ID /WP=CE14650 /TR=O02172 /GB=AAB52866.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 23
(-2.1)
A 		6.4
(-3)
A 		26.7
(-1.9)
A 		120
(3)
P 		114
B 50.8
(3)
A 		4.7
(-3)
A 		5.2
(-2.9)
A 		35.6
(1)
A 		46
C 25.4
(-2.6)
A 		13.2
(-2.8)
A 		3
(-3)
A 		326.1
(3)
P 		323
avr 33.1
(-2) 		8.1
(-3) 		11.6
(-2.9) 		160.6
(3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 10
(-3)
A 		26.4
(-1.8)
A 		41.7
(-0.7)
A 		92.8
(3)
M 		66.2
(1.1)
A 		40.4
(-0.8)
A 		83
B 41.9
(-0.7)
A 		48.6
(1.5)
A 		48.9
(1.6)
A 		34.7
(-3)
A 		36.7
(-2.4)
A 		53.4
(3)
P 		19
C 4.8
(-3)
A 		80
(3)
P 		9.8
(-2.6)
A 		78.8
(2.9)
A 		8.8
(-2.7)
A 		52.3
(0.8)
P 		75
avr 18.9
(-3) 		51.7
(0.9) 		33.5
(-1.2) 		68.8
(3) 		37.2
(-0.8) 		48.7
(0.6) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 8.4
(-0.4)
A 		1.4
(-3)
A 		7
(-0.9)
A 		17.6
(3)
P 		16
B 16.2
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		7.6
(-0.4)
A 		15
C 8.4
(-2.2)
A 		3.8
(-2.7)
A 		1
(-3)
A 		55
(3)
P 		54
avr 11
(-0.8) 		2.1
(-3) 		3.1
(-2.8) 		26.7
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.8
(-3)
A 		9.4
(-0.9)
A 		9.1
(-1)
A 		23.5
(3)
M 		20
(2)
A 		9.8
(-0.8)
A 		22
B 14.6
(0)
A 		16.2
(0.9)
A 		11.9
(-1.5)
A 		9.2
(-3)
A 		14.9
(0.2)
A 		19.9
(3)
P 		11
C 1.8
(-3)
A 		24.4
(3)
P 		2.5
(-2.8)
A 		15.8
(0.7)
A 		2.9
(-2.7)
A 		17.5
(1.2)
P 		23
avr 6.1
(-3) 		16.7
(3) 		7.8
(-2) 		16.2
(2.7) 		12.6
(0.7) 		15.7
(2.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172451_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18199
Sequence Type Exemplar sequence
Representative Public ID W05H7.2 NCBI
Target Description W05H7.2 /REP_DB=WormBase Gene ID /WP=CE14650 /TR=O02172 /GB=AAB52866.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075870, NM_070068, NM_171286
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y38F2AL.6 ENSEMBL cdna:known chromosome:CEL140:IV:2330192:2330679:-1 gene:Y38F2AL.6 None
SNAP00000038557 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12931188:12932942:1 None
NM_075870 NCBI Caenorhabditis elegans W05H7.2 (W05H7.2) mRNA, complete cds. None
SNAP00000023931 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2330383:2330818:-1 None
C32H11.7 ENSEMBL cdna:known chromosome:CEL140:IV:12930677:12931590:1 gene:C32H11.7 A 
SNAP00000043336 ENSEMBL cdna:SNAP chromosome:CEL140:X:1435476:1435911:1 None
NM_070068 NCBI Caenorhabditis elegans C32H11.7 (C32H11.7) mRNA, complete cds. A 
GENEFINDER00000023934 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2330277:2330818:-1 None
GENEFINDER00000043343 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1435615:1436017:1 None
NM_171286 NCBI Caenorhabditis elegans Y38F2AL.6 (Y38F2AL.6) mRNA, complete cds. None
W05H7.2 ENSEMBL cdna:known chromosome:CEL140:X:1435093:1435911:1 gene:W05H7.2 None
W05H7.2 ENSEMBL cdna:known chromosome:CEL140:X:1435093:1435911:1 gene:W05H7.2 None
SNAP00000038557 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12931188:12932942:1 None
NM_075870 NCBI Caenorhabditis elegans W05H7.2 (W05H7.2) mRNA, complete cds. None
GENEFINDER00000038565 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12929056:12932722:1 None
C32H11.7 ENSEMBL cdna:known chromosome:CEL140:IV:12930677:12931590:1 gene:C32H11.7 A 
SNAP00000023931 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2330383:2330818:-1 None
SNAP00000043336 ENSEMBL cdna:SNAP chromosome:CEL140:X:1435476:1435911:1 None
NM_070068 NCBI Caenorhabditis elegans C32H11.7 (C32H11.7) mRNA, complete cds. A 
GENEFINDER00000023934 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2330277:2330818:-1 None
GENEFINDER00000043343 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1435615:1436017:1 None
C32H11.7 ENSEMBL cdna:known chromosome:CEL140:IV:12930677:12931590:1 gene:C32H11.7 A 
SNAP00000038557 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12931188:12932942:1 None
Y38F2AL.6 ENSEMBL cdna:known chromosome:CEL140:IV:2330192:2330679:-1 gene:Y38F2AL.6 None
GENEFINDER00000038565 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12929056:12932722:1 None
NM_171286 NCBI Caenorhabditis elegans Y38F2AL.6 (Y38F2AL.6) mRNA, complete cds. None
NM_070068 NCBI Caenorhabditis elegans C32H11.7 (C32H11.7) mRNA, complete cds. A 
GENEFINDER00000043343 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1435615:1436017:1 None
SNAP00000043336 ENSEMBL cdna:SNAP chromosome:CEL140:X:1435476:1435911:1 None
W05H7.2 ENSEMBL cdna:known chromosome:CEL140:X:1435093:1435911:1 gene:W05H7.2 None
NM_075870 NCBI Caenorhabditis elegans W05H7.2 (W05H7.2) mRNA, complete cds. None
SNAP00000023931 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2330383:2330818:-1 None
GENEFINDER00000023934 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2330277:2330818:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026670 2/11 Cross Hyb Matching Probes None
GENEFINDER00000001099 3/11 Cross Hyb Matching Probes None
SNAP00000001096 2/11 Cross Hyb Matching Probes None
SNAP00000005124 2/11 Cross Hyb Matching Probes None
SNAP00000011131 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12930682-12931596(+) 92.89 97.97
chrX:1435092-1436017(+) 94.92 100.0
chrIV:2330282-2331206(-) 93.5 98.58
Public Domain and Genome References
Gene Title


Ensembl Y38F2AL.6
C32H11.7
W05H7.2
Entrez Gene 177020 Entrez gene
183131 Entrez gene
189228 Entrez gene
SwissProt Q9XUH0 EMBL-EBI
O02172 EMBL-EBI
Q8WTM4 EMBL-EBI
WormBase CE19714 Wormbase
CE30202 Wormbase
CE21618 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05141 Hypothetical protein C32H11.7 [Caenorhabditis elegans] ref|NP_502469.1| C32H11.7 [Caenorhabditis elegans] 2.0E-68
blast NP_508271 W05H7.2 [Caenorhabditis elegans] gb|AAB52866.2| Hypothetical protein W05H7.2 [Caenorhabditis elegans] 7.0E-46
blast NP_741337 Y38F2AL.6 [Caenorhabditis elegans] gb|AAL32237.1| Hypothetical protein Y38F2AL.6 [Caenorhabditis elegans] 3.0E-45
blast NP_741337 Y38F2AL.6 [Caenorhabditis elegans] gb|AAL32237.1| Hypothetical protein Y38F2AL.6 [Caenorhabditis elegans] 3.0E-43
blast NP_741337 Y38F2AL.6 [Caenorhabditis elegans] gb|AAL32237.1| Hypothetical protein Y38F2AL.6 [Caenorhabditis elegans] 9.0E-42
blast CAB05141 Hypothetical protein C32H11.7 [Caenorhabditis elegans] ref|NP_502469.1| C32H11.7 [Caenorhabditis elegans] 1.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508271.2 1 20-42
W05H7.2 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:172451_X_AT
cgacactccgaaataaccctagcgcgccctctttagcgaaaattttattcaatttttttt
tgcattttttgcaatttttctcgtttttttttcacgattaccgcttattttgcataaaaa
tcgagaaaatcaacgaaaaggatccttcaaaacgacggaataggaaaaagatgccaaaaa
tcaggagtgtcgccggcaccgactccgaacgagaaaagctccgacgaccgcaaacgagag
ccgaaggaatccggaaagcgaaggtaatattttattttcaaatatcgatacttgtttcta
acgagcgaaaatttagaataccgaattacgttcaacgacacaagattggaacttcctgcc
ccactcttgaagagcacgccgatttcgaggttttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACACTCCGAAATAACCCTAGCGC 128 253 29 Antisense
AGCGCGCCCTCTTTAGCGAAAATTT 633 81 49 Antisense
GCATTTTTTGCAATTTTTCTCGTTT 150 309 90 Antisense
TTCACGATTACCGCTTATTTTGCAT 349 683 119 Antisense
AAAAATCAGGAGTGTCGCCGGCACC 344 127 204 Antisense
GAACGAGAAAAGCTCCGACGACCGC 109 345 235 Antisense
GACGACCGCAAACGAGAGCCGAAGG 258 379 251 Antisense
ATCGATACTTGTTTCTAACGAGCGA 1 37 312 Antisense
GAATACCGAATTACGTTCAACGACA 674 325 344 Antisense
CACAAGATTGGAACTTCCTGCCCCA 339 193 367 Antisense
GAGCACGCCGATTTCGAGGTTTTCG 118 389 400 Antisense
Sequence Source Affymetrix Proprietary Database