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[172450_x_at]

Description R09A1.4 /REP_DB=WormBase Gene ID /WP=CE18130 /TR=O61934 /GB=AAC17778.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 04      4grp_high_8_8 > 20      6grp_total > 22      4grp_total > 12      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 176.3
(-0.4)
P 		74.5
(-3)
A 		139
(-1.4)
P 		312.3
(3)
P 		238
B 206
(3)
P 		160.4
(0.3)
A 		103.3
(-3)
M 		170.2
(0.9)
P 		103
C 148.9
(-1.6)
P 		215.2
(0.1)
P 		91.6
(-3)
P 		333.8
(3)
P 		242
avr 177.1
(-0.5) 		150
(-1.6) 		111.3
(-3) 		272.1
(3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 189.5
(3)
M 		130.8
(0.2)
P 		170.3
(2.1)
P 		63.1
(-3)
A 		161.7
(1.7)
A 		102.1
(-1.1)
A 		126
B 188.1
(3)
P 		120.4
(-0.7)
P 		164
(1.7)
P 		126.9
(-0.3)
P 		152.9
(1.1)
P 		77.1
(-3)
A 		111
C 120.8
(-2)
A 		261.5
(3)
P 		137.7
(-1.4)
P 		147.5
(-1)
A 		101
(-2.6)
A 		91
(-3)
P 		171
avr 166.1
(2.6) 		170.9
(3) 		157.3
(2) 		112.5
(-1.3) 		138.5
(0.6) 		90.1
(-3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 64.2
(3)
P 		16.2
(-3)
A 		36.3
(-0.5)
P 		45.7
(0.7)
P 		48
B 65.7
(3)
P 		39.6
(-0.7)
A 		23.9
(-3)
M 		36.3
(-1.2)
P 		42
C 49.3
(0.5)
P 		61.9
(3)
P 		31.9
(-3)
P 		56.3
(1.9)
P 		30
avr 59.7
(3) 		39.2
(-1.2) 		30.7
(-3) 		46.1
(0.2) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 34.9
(0.5)
M 		46.5
(2.6)
P 		37.1
(0.9)
P 		16
(-3)
A 		48.8
(3)
A 		24.9
(-1.4)
A 		33
B 65.4
(3)
P 		40.1
(-1.1)
P 		39.8
(-1.2)
P 		33.6
(-2.2)
P 		62.1
(2.5)
P 		28.8
(-3)
A 		37
C 44.8
(-1.2)
A 		79.8
(3)
P 		35
(-2.4)
P 		29.7
(-3)
A 		32.7
(-2.6)
A 		30.5
(-2.9)
P 		50
avr 48.4
(1.5) 		55.5
(3) 		37.3
(-0.8) 		26.4
(-3) 		47.9
(1.4) 		28.1
(-2.6) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172450_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15029
Sequence Type Exemplar sequence
Representative Public ID R09A1.4 NCBI
Target Description R09A1.4 /REP_DB=WormBase Gene ID /WP=CE18130 /TR=O61934 /GB=AAC17778.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070965(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070965 NCBI Caenorhabditis elegans R09A1.4 (R09A1.4) mRNA, complete cds. 11/11 None
R09A1.4 ENSEMBL cdna:known chromosome:CEL140:V:1035699:1037420:1 gene:R09A1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076204 1/11 Cross Hyb Matching Probes A 
NM_068671 5/11 Cross Hyb Matching Probes A 
NM_058700 6/11 Cross Hyb Matching Probes A 
NM_001027290 5/11 Cross Hyb Matching Probes None
SNAP00000031641 7/11 Cross Hyb Matching Probes None
GENEFINDER00000031644 7/11 Cross Hyb Matching Probes None
SNAP00000040246 3/11 Cross Hyb Matching Probes None
SNAP00000002696 5/11 Cross Hyb Matching Probes None
SNAP00000032774 7/11 Cross Hyb Matching Probes None
SNAP00000040499 7/11 Cross Hyb Matching Probes None
GENEFINDER00000040500 7/11 Cross Hyb Matching Probes None
SNAP00000014111 1/11 Cross Hyb Matching Probes None
M01B12.1 6/11 Cross Hyb Matching Probes A 
H31G24.2 7/11 Cross Hyb Matching Probes A 
T05F1.11 6/11 Cross Hyb Matching Probes None
Y52E8A.6 5/11 Cross Hyb Matching Probes A 
B0478.2 5/11 Cross Hyb Matching Probes A 
C12D12.6 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl R09A1.4
Entrez Gene 187721 Entrez gene
SwissProt O61934 EMBL-EBI
WormBase CE18130 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6278 RNA-dependent DNA replication inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
3964 RNA-directed DNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17778 Hypothetical protein R09A1.4 [Caenorhabditis elegans] ref|NP_503366.1| R09A1.4 [Caenorhabditis elegans] 5.0E-68
blast NP_501072 B0478.2 [Caenorhabditis elegans] 3.0E-50
blast T24544 hypothetical protein T05F1.12 - Caenorhabditis elegans 2.0E-49
Sequence
Target Sequence 
>C. ELEGANS:172450_X_AT
tttaatttttcagtcataggcggtaaacgatatattttataccaaaagtcagttcaacac
ctgcggattcttcaaatattgaggacctatcacaacatcctgtctggtgaataccacttt
ccaaatgccgcatcaactgtgaggaaggctcgctcgcccagatatccgtacatgatgtgc
ccttgtggatcaatcaacgaaagcttcctactagtcaatcttcacctatggaaccgtatg
gccaagttacttccggagacaatgagtcgtcaaatgtttgcttcacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAATTTTTCAGTCATAGGCGGTA 193 671 52 Antisense
AGTTCAACACCTGCGGATTCTTCAA 178 63 102 Antisense
GACCTATCACAACATCCTGTCTGGT 529 383 135 Antisense
GAATACCACTTTCCAAATGCCGCAT 294 325 160 Antisense
CTCGCCCAGATATCCGTACATGATG 473 233 204 Antisense
GATGTGCCCTTGTGGATCAATCAAC 590 407 225 Antisense
GAAAGCTTCCTACTAGTCAATCTTC 592 359 250 Antisense
GTCAATCTTCACCTATGGAACCGTA 219 463 265 Antisense
GAACCGTATGGCCAAGTTACTTCCG 90 345 282 Antisense
ACTTCCGGAGACAATGAGTCGTCAA 97 103 300 Antisense
GAGTCGTCAAATGTTTGCTTCACGA 34 401 315 Antisense
Sequence Source Affymetrix Proprietary Database