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[172449_x_at]

Description K06B9.4 /REP_DB=WormBase Gene ID /WP=CE07342 /TR=Q21260 /GB=AAA93449.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 80      6grp_total > 50      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 284.9
(3)
P 		116
(-3)
P 		122.2
(-2.8)
P 		267.7
(2.4)
P 		169
B 250.8
(3)
P 		181.4
(-0.7)
P 		137.5
(-3)
P 		200
(0.3)
P 		113
C 219.4
(-0.2)
P 		163.5
(-2.3)
P 		144.7
(-3)
P 		302
(3)
P 		157
avr 251.7
(2.8) 		153.6
(-2.1) 		134.8
(-3) 		256.6
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 161.5
(-3)
P 		215.8
(1.3)
P 		218.2
(1.5)
P 		236.6
(3)
P 		178.1
(-1.7)
P 		231.2
(2.6)
P 		75
B 263.3
(3)
P 		204.7
(0.4)
P 		215.4
(0.9)
P 		185.5
(-0.4)
P 		125.9
(-3)
P 		194.3
(-0)
P 		137
C 284.6
(3)
P 		187
(-3)
P 		250.7
(0.9)
P 		285.3
(3)
P 		209.5
(-1.6)
P 		223.1
(-0.8)
P 		98
avr 236.5
(3) 		202.5
(-0.1) 		228.1
(2.2) 		235.8
(2.9) 		171.2
(-3) 		216.2
(1.1) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 103.7
(3)
P 		25.2
(-3)
P 		32
(-2.5)
P 		39.2
(-1.9)
P 		79
B 80
(3)
P 		44.8
(-1.4)
P 		31.9
(-3)
P 		42.6
(-1.7)
P 		48
C 72.6
(3)
P 		47
(-3)
P 		50.4
(-2.2)
P 		50.9
(-2.1)
P 		26
avr 85.4
(3) 		39
(-2.9) 		38.1
(-3) 		44.2
(-2.2) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 29.8
(-3)
P 		76.7
(3)
P 		47.5
(-0.7)
P 		60
(0.9)
P 		53.7
(0.1)
P 		56.3
(0.4)
P 		47
B 91.6
(3)
P 		68.1
(-0.3)
P 		52.3
(-2.5)
P 		49.1
(-3)
P 		51.2
(-2.7)
P 		72.4
(0.3)
P 		43
C 105.5
(3)
P 		57
(-3)
P 		63.8
(-2.2)
P 		57.4
(-3)
P 		67.8
(-1.7)
P 		74.7
(-0.8)
P 		49
avr 75.6
(3) 		67.3
(0.6) 		54.5
(-3) 		55.5
(-2.7) 		57.6
(-2.1) 		67.8
(0.8) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172449_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10726
Sequence Type Exemplar sequence
Representative Public ID K06B9.4 NCBI
Target Description K06B9.4 /REP_DB=WormBase Gene ID /WP=CE07342 /TR=Q21260 /GB=AAA93449.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000004550 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7679216:7682215:-1 9/11 None
GENEFINDER00000011541 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4189932:4192924:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066274 8/11 Cross Hyb Matching Probes A 
SNAP00000004536 8/11 Cross Hyb Matching Probes None
SNAP00000011532 8/11 Cross Hyb Matching Probes None
C18H2.2 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7679213-7682213(-) 99.39 99.39
chrIV:4189937-4192930(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ01530 Hypothetical protein K06B9.4 [Caenorhabditis elegans] ref|NP_500510.3| K06B9.4 [Caenorhabditis elegans] 0.0
blast T29499 hypothetical protein K06B9.4 - Caenorhabditis elegans 0.0
blast AAA50667 Hypothetical protein C18H2.2 [Caenorhabditis elegans] ref|NP_498675.3| C18H2.2 [Caenorhabditis elegans] 1.0E-171
blast AAA50667 Hypothetical protein C18H2.2 [Caenorhabditis elegans] ref|NP_498675.3| C18H2.2 [Caenorhabditis elegans] 1.0E-117
Sequence
Target Sequence 
>C. ELEGANS:172449_X_AT
aatttaacaaccttcacagttctgaaaacggagagattgagggagaccagaggacaagcc
agaagattcaagaaaaaaaattcacaaaattttccaaagacaattatgatcgtctgccaa
atggcgctggtcacatccaaagatgatgagttattcgaatccagcatgacttcttttgac
acttccacacattcacgcagttcaggaagaaaaagaacgcaaactcgtccatactctccg
acaccagattcagtatcgaagcctttgattccatcggagaaatcactacatttttttgga
tcaattcgcgtaaagttccttgttttaagaaatccgaataactgcgatgtggaatttgaa
gctggatatgacagaagttacatcacaattaaaccggattttggaatactgaaagccgga
agtagtgtcaaagtaacgatcacaaagagttttggaaatgaaagtgaatcagattcgatt
cagttttcttcaaataatccgaattcttcctgtggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTAACAACCTTCACAGTTCTGA 322 173 1909 Antisense
ATTATGATCGTCTGCCAAATGGCGC 408 5 2011 Antisense
AAATGGCGCTGGTCACATCCAAAGA 418 119 2027 Antisense
AATCCAGCATGACTTCTTTTGACAC 626 167 2066 Antisense
CTTTTGACACTTCCACACATTCACG 163 223 2081 Antisense
AAGAACGCAAACTCGTCCATACTCT 106 153 2121 Antisense
ACTCTCCGACACCAGATTCAGTATC 97 101 2141 Antisense
GTATCGAAGCCTTTGATTCCATCGG 244 455 2161 Antisense
GATCAATTCGCGTAAAGTTCCTTGT 689 421 2207 Antisense
GATTCGATTCAGTTTTCTTCAAATA 601 431 2380 Antisense
AATAATCCGAATTCTTCCTGTGGTA 558 171 2401 Antisense
Sequence Source Affymetrix Proprietary Database