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[172448_x_at]

Description C29F9.4 /REP_DB=WormBase Gene ID /WP=CE08452 /TR=Q9TZB7 /GB=AAC68754.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 6.5
(-2.2)
A 		2.9
(-3)
A 		31.5
(3)
A 		29
(2.5)
A 		29
B 30
(3)
A 		4.9
(-2.4)
A 		1.9
(-3)
A 		8.3
(-1.6)
A 		28
C 19.6
(-0.1)
A 		13.9
(-1.1)
A 		3.4
(-3)
A 		36.8
(3)
A 		33
avr 18.7
(0.9) 		7.2
(-3) 		12.3
(-1.3) 		24.7
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 10.1
(-2.1)
A 		3.7
(-3)
A 		45.1
(2.8)
A 		35.3
(1.4)
A 		27.1
(0.3)
A 		46.6
(3)
A 		43
B 7.5
(-2.9)
A 		6.4
(-3)
A 		54
(2.9)
M 		55
(3)
A 		23.4
(-0.9)
A 		35
(0.5)
A 		49
C 7.2
(-3)
A 		19.1
(-1.8)
A 		64.4
(3)
P 		13
(-2.4)
A 		60.2
(2.6)
A 		19.4
(-1.7)
A 		57
avr 8.3
(-3) 		9.7
(-2.8) 		54.5
(3) 		34.4
(0.4) 		36.9
(0.7) 		33.7
(0.3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.4
(-1.6)
A 		0.6
(-3)
A 		8.2
(3)
A 		4.2
(-0.2)
A 		8
B 9.6
(3)
A 		1.2
(-2.5)
A 		0.5
(-3)
A 		1.8
(-2.1)
A 		9
C 6.5
(3)
A 		4
(0.2)
A 		1.2
(-3)
A 		6.2
(2.7)
A 		5
avr 6.2
(3) 		1.9
(-3) 		3.3
(-1) 		4.1
(0.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.9
(-2.6)
A 		1.3
(-3)
A 		9.8
(2.1)
A 		9
(1.6)
A 		8.2
(1.1)
A 		11.3
(3)
A 		10
B 2.6
(-2.8)
A 		2.1
(-3)
A 		13.1
(2.3)
M 		14.6
(3)
A 		9.5
(0.6)
A 		13.1
(2.3)
A 		13
C 2.7
(-3)
A 		5.8
(-1.9)
A 		16.4
(1.9)
P 		2.6
(-3)
A 		19.5
(3)
A 		6.5
(-1.6)
A 		17
avr 2.4
(-3) 		3.1
(-2.6) 		13.1
(3) 		8.7
(0.5) 		12.4
(2.6) 		10.3
(1.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172448_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8172
Sequence Type Exemplar sequence
Representative Public ID C29F9.4 NCBI
Target Description C29F9.4 /REP_DB=WormBase Gene ID /WP=CE08452 /TR=Q9TZB7 /GB=AAC68754.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064745 NCBI Caenorhabditis elegans C29F9.4 (C29F9.4) mRNA, complete cds. 11/11 None
C29F9.4 ENSEMBL cdna:known chromosome:CEL140:III:120491:120947:1 gene:C29F9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:120490-120783(+) 66.4 66.4
Public Domain and Genome References
Gene Title
Ensembl C29F9.4
Entrez Gene 175178 Entrez gene
SwissProt Q9TZB7 EMBL-EBI
WormBase CE08452 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68754 Hypothetical protein C29F9.4 [Caenorhabditis elegans] ref|NP_497146.1| C29F9.4 [Caenorhabditis elegans] 2.0E-57
Sequence
Target Sequence 
>C. ELEGANS:172448_X_AT
atgacgaagatgctctacaaaacctttcaaaaataaatttggttggttttgaccagcaac
ccttcaaatatttgatttttaacaggaaaacacgaattctgaaagtaatgttaaatattt
gttgtttttgcaaaacttggaaaaacagtaagtcgaaaaaaaatttgtcgattaaaattt
tggtgattttcagcgagaagatgatggagacggaacaagcggaggtaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACGAAGATGCTCTACAAAACCT 302 35 29 Antisense
GAAGATGCTCTACAAAACCTTTCAA 184 339 34 Antisense
GATGCTCTACAAAACCTTTCAAAAA 696 413 37 Antisense
TAAATTTGGTTGGTTTTGACCAGCA 44 639 62 Antisense
TTGGTTTTGACCAGCAACCCTTCAA 535 701 71 Antisense
GACCAGCAACCCTTCAAATATTTGA 684 383 79 Antisense
TAACAGGAAAACACGAATTCTGAAA 231 85 108 Antisense
ATGTTAAATATTTGTTGTTTTTGCA 534 47 136 Antisense
AATTTTGGTGATTTTCAGCGAGAAG 294 173 204 Antisense
GATGATGGAGACGGAACAAGCGGAG 414 411 228 Antisense
GAGACGGAACAAGCGGAGGTAACAA 531 303 235 Antisense
Sequence Source Affymetrix Proprietary Database